Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5801g00029 ATGCAACAGAGGTTCAAGCTTCAGCAACAACAAGCCCTGATACAGCAAGCCTTGCTTCAGCAACAGCAGATGTATCACCCAGGGATGCTAGCCGCCACTATGTCCCAGATTGAGCCTATTCCAAGTGGAAATTTGCCTCCAGGCTTTGATACTTCTACATGCCGCAGTGTTTATGTAGGAAATATTCATGTAAATGTTACTGAAAAGCTTCTTGCTGAAGTCTTTCAAAGTGCTGGTCCTCTTGCTGGGTGCAAGCTCATAAGGAAAGAAAAGTCCTCGTATGGTTTTGTGGATTATCATGATAGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGCCAACTATATGGGCAGGCACTTAAGGTTAATTGGGCATACGCCAATACTCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCTCAAAATGCAATCAATGATATGACTGGTAAGTGGCTGGGAAATAGGCAGATACGATGCAACTGGGGAACCAAGGGCGCTGGTATAAGCACCAATGAGGAGAAGAACAATGACACCCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAGGAATATAATAATGAGGATGCTCCTGAAAACAGTCCTGCCTATACCACCGTTTATGTTGGCAACCTTCCTCATGATGTAACGCAAAATGAACTCCACTATCAATTTCATGCATTGGGGGCTGGAGTGATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTGAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAAATGGCTAATGGAAGAGTACTTCGTGGAAAAGCAATGAAGTGTTCATGGGGGAACAAGCCAACACCTCCTGGGACAGCTTCAAACCCACTACCTCCTCCTACACAACCTTACCAAATCCTGCCCACAACAGGGATGAACCAGGGCTATTCTCCAACTGAGTTATTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCAGGCCTTTCAGGTCAAGCTCTTGTGCATATGACTGGTCAACACGGCCTTGCTGCTGCCTCCATTGGCTTAAGCTCTGGGGGATCCCAAGCCATGTATGATGCATATTCTGGTAATGCGTCAAGGCAGCACCTCCTGTTCTATCGTTGA 1305 0.4559 MQQRFKLQQQQALIQQALLQQQQMYHPGMLAATMSQIEPIPSGNLPPGFDTSTCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMTGKWLGNRQIRCNWGTKGAGISTNEEKNNDTQNAVVLTNGSSDGGQEYNNEDAPENSPAYTTVYVGNLPHDVTQNELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGRVLRGKAMKCSWGNKPTPPGTASNPLPPPTQPYQILPTTGMNQGYSPTELLAYQRQLALSQAAVSGLSGQALVHMTGQHGLAAASIGLSSGGSQAMYDAYSGNASRQHLLFYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5801g00029 434 SUPERFAMILY RNA-binding domain, RBD 133 221 IPR035979 GO:0003676
Pral5801g00029 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Pral5801g00029 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Pral5801g00029 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Pral5801g00029 434 Gene3D - 139 218 IPR012677 -
Pral5801g00029 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 339 - -
Pral5801g00029 434 SMART rrm2_1 141 214 IPR003954 GO:0003676
Pral5801g00029 434 SMART rrm2_1 263 332 IPR003954 GO:0003676
Pral5801g00029 434 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Pral5801g00029 434 Gene3D - 239 340 IPR012677 -
Pral5801g00029 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Pral5801g00029 434 Gene3D - 1 138 IPR012677 -
Pral5801g00029 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Pral5801g00029 434 SUPERFAMILY RNA-binding domain, RBD 250 345 IPR035979 GO:0003676
Pral5801g00029 434 CDD RRM2_PUB1 139 218 - -
Pral5801g00029 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Pral5801g00029 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Pral5801g00029 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Pral5801g00029 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
Pral5801g00029 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Pral5801g00029 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Pral5801g00029 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5801g00029 Pral-Chr5801 190789 197629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5801g00029 56 321 Eukaryotic Initiation Factors Gene Family AT1G22760 27.007 1.74e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5801g00029 K13201 - gmx:100777108 775.393