Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5801g00014 ATGGATGATTATTCTGGTAAACGAGCCATAGATGGGGTGGCAGTACCTAAAAAGGGGATGGCTCATGTATTTAGAGATACTGCTAATGCTAGGGACCGTAATGGTCGGTTTTGCAGTCGACCGGGTTGCAGCAGTAGAGTGAATTCTCCAAAGAATGCTCAATTCAGTTCATCTGAAAAAGGGAAATCTTCAAGGCCTCCAATCCGATCTTCAGGTCGTAAGGAAGCTATCGGAAGTTCCTCTAGAACTTTACCTGGATCTTATAACCCAGGAAAATCCCCTATAGAGCCCCGGAAAACATTATCTTGTCAATCAGAGACTGCAGCATGTGAAACGAGTAGTTTACAGGATGAAACAGAAATTTCTGAGCTCATCCCACCACCTGAAAAAATTCAAAGAGGGCCTCAAGCTGGAGTGGAAAGTTCAGAGTCTATTAATATCATGCCAATGGAAGTAGGAAGCTCTAGTGTAGCATCAAACACAACATACAGGAGGAGTCTTCGTCAAAAGCCTGGATTGAATGGTCAAGATTTTAAAAGCTCTGCCTCGGTGACACGCTCAGGAGTTAGCAGGTATGGCTTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGCTGTTCATCATCTGATTCAACCCTGAATAGAAGGAAAGATGTGATGAAAAAGAGAAACTGTGAAGGAGAAAGTAGCTCTGCTAGAGGTAAGAAGATGAGTGGATCTTCAGTGGACGGACAACATTCTGGCTCCAGGAATGGTATATCTATATCAGATTCAAGAATATCCAGAAACTTGCCTCCTCACAGGGATAACAACAACATTGGATCAGTTAGAACTAGAAGATCTTTCAATGGTCATGCCAGGGGAAGGCTTCCTAGCCAAGAAAATGAAAACCCTGCACCACCCAATGAGTCCCCTATTACCATATCATCTTTGCCTCATTCCAGTGACCTTAATGCTCATGATTTATTACATCACTCCTCGTTGAATACTCCCCTGAGAATTCCAAGATCTTACAGTAGACCGGGTAGTAGCAGTGAGCAGTTATTTGGTGTTTTGCCCCCATCCCCTTCAGAATATGGAATCACTCGTTCTCTTATAAACCGGGACAGTTTCCGACGCTGCAACATGGATGGCATTGCAGAGGTTTTATTGGCACTCGAGAGGATTGAACAAGATGAAGATCTTACCCATGAGCAAATTCTTTTACTGGAAACCAACTTGTTCCTTAATGGACTAAACTTCTATGATCAACATAGAGACATGCGATTGGATATTGATAACATGTCATACGAGGAACTCCTGGCTTTGGAAGAAAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTTACAGAATGCCTAAAGAGAAGTTTCCATCAACCTGCCTCTTCAGATGATGCAGCTGAGAGCTGCAATGAGGATAATGATGACATAAAATGCAGCATCTGCCAGGAGGAATATGTGGAGGCAGAGGAAGTGGGGAGTCTGCAATGCGAGCATAGATATCATGTGGGGTGCATACAGCAATGGCTGCGCCTCAAGAATTGGTGTCCTATTTGCAAAGCGTCTGCGGCACCATCACATTCGTCTTCCTCAACTTCAACCCCTTGA 1629 0.4408 MDDYSGKRAIDGVAVPKKGMAHVFRDTANARDRNGRFCSRPGCSSRVNSPKNAQFSSSEKGKSSRPPIRSSGRKEAIGSSSRTLPGSYNPGKSPIEPRKTLSCQSETAACETSSLQDETEISELIPPPEKIQRGPQAGVESSESINIMPMEVGSSSVASNTTYRRSLRQKPGLNGQDFKSSASVTRSGVSRYGLRNLRCNSISDVIPSGCSSSDSTLNRRKDVMKKRNCEGESSSARGKKMSGSSVDGQHSGSRNGISISDSRISRNLPPHRDNNNIGSVRTRRSFNGHARGRLPSQENENPAPPNESPITISSLPHSSDLNAHDLLHHSSLNTPLRIPRSYSRPGSSSEQLFGVLPPSPSEYGITRSLINRDSFRRCNMDGIAEVLLALERIEQDEDLTHEQILLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALTECLKRSFHQPASSDDAAESCNEDNDDIKCSICQEEYVEAEEVGSLQCEHRYHVGCIQQWLRLKNWCPICKASAAPSHSSSSTSTP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5801g00014 542 FunFam E3 ubiquitin-protein ligase arkadia 448 532 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 218 234 - -
Pral5801g00014 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 93 531 IPR045191 GO:0061630
Pral5801g00014 542 SUPERFAMILY RING/U-box 480 531 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 98 120 - -
Pral5801g00014 542 SMART ring_2 486 526 IPR001841 -
Pral5801g00014 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 541 IPR013083 -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 208 322 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 167 187 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 26 141 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 299 322 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 74 88 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 335 355 - -
Pral5801g00014 542 ProSiteProfiles Zinc finger RING-type profile. 486 527 IPR001841 -
Pral5801g00014 542 Pfam Ring finger domain 485 527 IPR001841 -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 235 283 - -
Pral5801g00014 542 MobiDBLite consensus disorder prediction 41 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5801g00014 Pral-Chr5801 77711 81823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5801g00014 365 530 C3H Transcription Factor Family AT2G15530 43.114 3.30e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5801g00014 - - gmx:100819874 696.041