Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5801g00003 ATGTTCTCCAGCAGCCAGCTTGATGCTACTGCCGCCTTCTCCGGAGGCGGATTCATGACCGCGGAGTCTACCCAGCATAACGATTCATCTCCGTTACCGGCCAAAAGCCGTGAGACTCAGGGTTTAGTTCCGGTAACAGTGAAGCAGATAAGCGAAGCCTCTCAGTCCGGCGACGAAAAGTCGAATTTCCTAATCAACGGCGTGGATGTTACCAATGTCACCTTGCTTGGCATGGTGTTTGAGAAAGTTGACAGAAACACTGACGTTAATTTTGTTCTAGATGATGGAACAGGACGGATCAAATGTCGAAGATGGGTGAATGAACCTTTTGATACAAAGGAAATGGAAGAAATACGGGATGGTATATATGTTCGTGTGTATGGGCATTTAAAAAGCTTTCAAGGTGTAAAACAGGTTGTTGCTTTCTCAATCAGGCCAGTGATGAATTATGATGAGATTTCTTTTCACTTTATTGACTGCATACATAATCATCTACACTCTAAAGTAAAGGTTGAAGGAGTTACTCCTGCACGTCCTCCGTCCATAAACTCATCTCATGCAACAACAAATGGAAATCAAGCACCATCATCTAATCCATTATATGCACAATATAGCGTGGATGGGCTCAAGGATTGTGATAAATTGGTCCTTGATTATCTGAATCAGCATTCCGACATGTCTGATGAAAGGGGAATACATGTTGATGAGCTGTCTCGAGCGCTTAAACTTCCACTGGACAAGATCATGTTGTCACTCAAGACTCTTGGTGACGATGGACTAGTATACTCCACCATCGATGACAATCATTACAAGCAAGCTTGA 822 0.4331 MFSSSQLDATAAFSGGGFMTAESTQHNDSSPLPAKSRETQGLVPVTVKQISEASQSGDEKSNFLINGVDVTNVTLLGMVFEKVDRNTDVNFVLDDGTGRIKCRRWVNEPFDTKEMEEIRDGIYVRVYGHLKSFQGVKQVVAFSIRPVMNYDEISFHFIDCIHNHLHSKVKVEGVTPARPPSINSSHATTNGNQAPSSNPLYAQYSVDGLKDCDKLVLDYLNQHSDMSDERGIHVDELSRALKLPLDKIMLSLKTLGDDGLVYSTIDDNHYKQA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5801g00003 273 MobiDBLite consensus disorder prediction 178 197 - -
Pral5801g00003 273 CDD RPA2_DBD_D 72 165 - -
Pral5801g00003 273 Pfam Replication protein A C terminal 179 268 IPR014892 -
Pral5801g00003 273 SUPERFAMILY "Winged helix" DNA-binding domain 207 271 IPR036390 -
Pral5801g00003 273 Gene3D - 203 273 IPR036388 -
Pral5801g00003 273 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Pral5801g00003 273 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral5801g00003 273 MobiDBLite consensus disorder prediction 176 197 - -
Pral5801g00003 273 MobiDBLite consensus disorder prediction 18 38 - -
Pral5801g00003 273 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Pral5801g00003 273 FunFam Replication protein A 32 kDa subunit 204 273 - -
Pral5801g00003 273 Gene3D - 34 168 IPR012340 -
Pral5801g00003 273 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Pral5801g00003 273 PANTHER REPLICATION PROTEIN A-RELATED 6 271 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5801g00003 Pral-Chr5801 28056 31197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5801g00003 1 271 Core DNA Replication Machinery Family AT2G24490 48.029 1.11e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5801g00003 K10739 - qsa:O6P43_015598 431.409