Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5800g00004 ATGGAGTGGGACAGCAATTCAGATCTAAGCGGTGATGATGAGGAGACCTTCGCGTTTAACGATGGTGGCCTACTTCCCTTTCCGGTGGAAAACTTGCTCCAAACGACTCCCTGTGGGTTCGTCGTCACTGATGCTCTCGAGCCTGACCACCCTATTATTTATGTCAATACTGTGTTCGAGATGGTCACTGGCTATCGGGCAGAGGAAGTGCTTGGTCGCAACTGCCGATTCCTGCAGTGTCGTGGTCCATTTGCTAAAAGAAGGCATCCATTGGTGGACTCTGCTGTAGTTTCTGAAATTAGGAGGTGTCTTGATGAGGGGATTGAGTTCCAAGGTGAGTTATTAAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACAATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAATATTGATCTTGGTCCTGTACTGGCTCCTGCAATGAAGGAATCTGCCAAGTCATCTGATAAATTTCGTACTGCTCTTTCAACGTTGAGTCCCCTTTCAGTGGGGGACCGTAATGTATCTCGTGGAGTTTGTGGGATTCTGCAATTGAGTGATGAGGTAATATCTCTCAAGATACTTTCCCGCCTAACTCCAAGAGATATTGCTTCTGTTAGCTCTGTCTGCAGGCAATTATATGAACTGACAAAAAATGAAAGTCTTTGGAGAATGGTGTGTCAAAATGCATGGGGTAGTGAAACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGTTCGGCTGGCAAGAGAGTTGACTACTCTTGAAGCCGCAGCATGGAGAAAGCTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCCTGTGCTGTTGGTAATAGGGTAGTCTTATTTGGTGGTGAAGGTGTCAATATGCAGCCTATGAATGACACCTTTGTGCTGGATCTAAACTCAAAAAATCCGGAGTGGCAACACGTCCAGGGCTTGCTCAATGACGTCTTTGTGCTGGACCTGGATGCGAAGCCTCCTACTTGGCGTGAAATATCTGGATTGGCACCTCCGCTTCCAAGATCATGGCACAGCTCCTGTACTCTTGATGGTACCAAGCTAATAGTTTCTGGTGGCTGTGCAGATTCTGGAGTACTTTTGAGTGACACATTCCTCCTTGACCTGTCTATGGAGAAACCAGTGTGGAGAGAGATACCTGTGGCATGGACTCCACCTTCTCGCCTAGGGCACACACTATCTGTTTATGGGGGGAGGAAAATACTAATGTTTGGAGGTCTTGCTAAGAGTGGGCCTCTGAGGTTTCGTTCCAGTGATGTATTCACCATGGACTTAAGTGAGGAGGAACCATGTTGGAGATGTGTAACTGGGAGTGGAATGCCCGGTGCTGGGAATCCTGGGGGCATAGCTCCCCCTCCTAGACTTGATCATGTTGCGGTTAGTCTCCCGGGTGGGAGAATCCTGATATTTGGTGGATCTGTTGCAGGTCTTCACTCTGCTTCCCAGCTTTACATCCTGGACCCCACCGAAGAGAAACCTACATGGAGAATACTGAATGTACCAGGACGCCCTCCTAGATTTGCTTGGGGACACAGCACGTGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGCCAAACTGGAGAGGAATGGATGCTAGGCGAGCTCCATGAGCTTTCTCTGGCAAGTTCTGTAAATTAG 1743 0.4796 MEWDSNSDLSGDDEETFAFNDGGLLPFPVENLLQTTPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSAVVSEIRRCLDEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVLAPAMKESAKSSDKFRTALSTLSPLSVGDRNVSRGVCGILQLSDEVISLKILSRLTPRDIASVSSVCRQLYELTKNESLWRMVCQNAWGSETTRVLETVPGARRLGWVRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSKNPEWQHVQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLGELHELSLASSVN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5800g00004 580 Pfam Kelch motif 488 535 IPR011498 GO:0005515
Pral5800g00004 580 Pfam Kelch motif 421 472 IPR011498 GO:0005515
Pral5800g00004 580 CDD PAS 36 146 IPR000014 -
Pral5800g00004 580 Gene3D - 479 579 IPR015915 GO:0005515
Pral5800g00004 580 ProSiteProfiles F-box domain profile. 209 242 IPR001810 GO:0005515
Pral5800g00004 580 Pfam PAS domain 37 147 IPR000014 -
Pral5800g00004 580 Pfam Galactose oxidase, central domain 294 335 - -
Pral5800g00004 580 SUPERFAMILY F-box domain 190 260 IPR036047 GO:0005515
Pral5800g00004 580 CDD F-box_AtADO-like 197 243 - -
Pral5800g00004 580 SMART fbox_2 201 241 IPR001810 GO:0005515
Pral5800g00004 580 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Pral5800g00004 580 Pfam Galactose oxidase, central domain 340 375 - -
Pral5800g00004 580 Pfam F-box-like 206 244 IPR001810 GO:0005515
Pral5800g00004 580 FunFam Adagio protein 1 27 158 - -
Pral5800g00004 580 Gene3D PAS domain 22 158 - -
Pral5800g00004 580 NCBIfam PAS domain S-box protein 32 146 IPR000014 -
Pral5800g00004 580 Gene3D - 339 478 IPR015915 GO:0005515
Pral5800g00004 580 Gene3D - 270 338 IPR015915 GO:0005515
Pral5800g00004 580 Gene3D - 194 242 - -
Pral5800g00004 580 FunFam Putative LOV domain-containing protein 444 579 - -
Pral5800g00004 580 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
Pral5800g00004 580 FunFam Adagio protein 1 195 242 - -
Pral5800g00004 580 SUPERFAMILY Galactose oxidase, central domain 341 563 IPR011043 -
Pral5800g00004 580 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 28 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5800g00004 Pral-Chr5800 42981 50035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5800g00004 33 148 AGC Kinase Gene Family AT5G58140 34.483 6.63e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5800g00004 K12115 - tcc:18589282 1073.54