Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5790g00007 ATGCAAGGTAACAGAAGGACTCTTGGTTCCTTTCCAGCAATTGTAAGTATGATGCAGGAACCTAGTTCTAGTGGCACTGATATAAATCAGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCAGATTTTCTGGGATCCTCTAGTGAGACTGCATGTTTACGCAACAGTGCTCCTGATGTTCAGAACTTTGATGGATGGAATGCTGGTGAACCTAGTTCTAGTATGAATCTTCACAGTCACGTCAATAATGATGGGCTAAAAGCAGAACATGGTTGGTCTTCTTCATGTGGTGCTTCTGCTGAGGATGTTCTCAGACCAGAAGAACGGCAATTTGATCCAAATAATGTAACTTTCCCTGGTAACTCGAATGCCAACCTATGTGGAAATCAACCCAGAGTTCAGCCTTTCTTCTTGCAAGGTTCCAGCTCCAACCATGGAACCCAGGATGCTGCTTTAAATATGGGTTCCATTGCCAGCCCTCTTAATCATGGGAAAGGAACAGAACCTTGTACCAGTGATAGTATTCACAATACATATGGATTCAATAGTAAGCATACATCATTTGTCAGTGCTTCATATGATCATGTAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGGGAAGATAATGATAATTCAAGCTCTTCTTTGGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGGCAGATGTGTAATGGAGGAAGTTCAAGCTCTTTTCTAGAAGCTGAAAGCAGTTGCTGGCGTACTGGGACTCTCAGTTCTAATATTGCTTCCAGCAGTTTAAATTTGTCTAGACCTTCTGAGGATGTTCCTATTAATAATCCTCCAGTAGAGCAGAACCCAAGAAATGAGATGAGGCACATAGCTTCTGATGCATTCCCTTTGATAGGAGTTACGGGAAATGTGAACAGGCCTCTGAGAAGCTTTGATAGGAGGATGAATTATCCACAGCGACAGGAATCTAGGCATCCTAATCATTCTTCTTCCCACCAAACACCTACCTCTCATCCATTTAATGATTCTCTAGAATTAAGGTTAACAGCTGGAGTTACAGCAAGCAATTCTAGTTCTTTTCAGTGTCAGTCACATGTTACGCATGTTCCTGGTTTGCCAGGGAGCACACATTCTCTTCCTTGGAGTGGAGCTTCTAGTTCAAGAGGTGCAAGTTCATCTACTTCTTATAACTCTGCGGAAAGAGAGCTTCGGGAAGAATTGAACTTAAGAATTTTTCCAAGAGACAATCCAGAGCACCCCATCCTTGCACCTTCATCTTCTGGACTTGACCCTACCAGCTGGCATATTTCATCCGGCAATGTGAATAATTCTGGTAGTGCACCTCCTACTTCCTGGATTGGATCCAGTTCAAGTGTCAATTCATTACCTAATCCAAGCTGGATTGTTCCCCATGAAGTTCCAACACGGAGGCAGCTAACATTATCAGATTTCAGTCCCTGGTCCTTTTTTCCATCGATGAACTCAGTATCTGGTAGTCATAATGTTCATTCTGCCTCATCTTCTACTTCTTCTGGTCCTCCTTCCTTTACTCCAGACATGAGCAGCCACCACTCATATGCAAGATTGGCATCATTGATGGAGAGAAGAGGTGATGAAGTTCTTAGTGCACCTCACTCATTGCGTGCTTTAGCTGTTGACATTGAGGGGAGACGCCGATTGATATCTGAGATTCGTCAAGTCTTAAGTGCAATGCGCAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCGTTCATATATCATGGTATGGCTGAACTACATGATAGGCACAGGGACCTGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGCTGGCATTGGAGGAGCGCATCGGAGATGTGAGCACTGGATTGAGCGAGGATACCATTATGACGTTGATGAAACATCGGATCTACACGTCTGTCATGACTGAGTCTTCTACAGATATGGAACCTTGTTGTATCTGTCAGGAGCAATACGCTGATGGGGAGGATGTAGCCTCACTAGATTGTGGACACGAATTCCACACCGACTGTATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCTATTTGCAAAACAACAGCCTTAGCAAGATGA 2145 0.4378 MQGNRRTLGSFPAIVSMMQEPSSSGTDINQQTSLNHMQNPVDARLSDFLGSSSETACLRNSAPDVQNFDGWNAGEPSSSMNLHSHVNNDGLKAEHGWSSSCGASAEDVLRPEERQFDPNNVTFPGNSNANLCGNQPRVQPFFLQGSSSNHGTQDAALNMGSIASPLNHGKGTEPCTSDSIHNTYGFNSKHTSFVSASYDHVGTSSGSSGYIVGEDNDNSSSSLVNWGSSCKRKALESTSGQMCNGGSSSSFLEAESSCWRTGTLSSNIASSSLNLSRPSEDVPINNPPVEQNPRNEMRHIASDAFPLIGVTGNVNRPLRSFDRRMNYPQRQESRHPNHSSSHQTPTSHPFNDSLELRLTAGVTASNSSSFQCQSHVTHVPGLPGSTHSLPWSGASSSRGASSSTSYNSAERELREELNLRIFPRDNPEHPILAPSSSGLDPTSWHISSGNVNNSGSAPPTSWIGSSSSVNSLPNPSWIVPHEVPTRRQLTLSDFSPWSFFPSMNSVSGSHNVHSASSSTSSGPPSFTPDMSSHHSYARLASLMERRGDEVLSAPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDLRLDVDNMSYEELLALEERIGDVSTGLSEDTIMTLMKHRIYTSVMTESSTDMEPCCICQEQYADGEDVASLDCGHEFHTDCIKQWLMQKNLCPICKTTALAR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5790g00007 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 226 712 IPR045191 GO:0061630
Pral5790g00007 714 MobiDBLite consensus disorder prediction 272 292 - -
Pral5790g00007 714 SUPERFAMILY RING/U-box 666 711 - -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 436 467 - -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 381 410 - -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 508 532 - -
Pral5790g00007 714 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 272 293 - -
Pral5790g00007 714 FunFam E3 ubiquitin-protein ligase MBR2 634 712 - -
Pral5790g00007 714 Pfam Ring finger domain 667 708 IPR001841 -
Pral5790g00007 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 712 IPR013083 -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 328 351 - -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 424 467 - -
Pral5790g00007 714 MobiDBLite consensus disorder prediction 388 408 - -
Pral5790g00007 714 SMART ring_2 667 707 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5790g00007 Pral-Chr5790 26612 32434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5790g00007 18 712 C3H Transcription Factor Family AT2G15530 37.922 1.04e-116 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5790g00007 - K19041 gmx:100809024 845.499