Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5790g00006 ATGTCTTTTGCAGATAATAGGGAACAAGAGAGGGAAATCCGGTCCAGTTGTTCAGATAATTCTGATAAACTCATGGACAAGCATTCTAATTCAAATCGTCCTTCAATGACAAGAGGCAAGGAGAAGCGTGTTACTGCTACTGGTCATGAGATGGATACTATTCACAGGGACAGGCGTAAGAAAATCAAAACCTTGTTTGATAGCCTTCAAGCTATGCTCCCTCATGTGCCCAAGAAGGCTGACAAAGTGACAGTAGTTGATGAAACATTGAACTACATAAGAAATTTGGAGGAAACTTTGAAAGATCTGGAAACGAAGAAAAAGGAACGACTTCAATCTTCTGTGGGCTCTAATGTGGGTAATCCCAGTGGAACTTCAAGAGAGGCTTTCATAGCTGAACAAGTAGCTTCCTCCTCACCCACCCCAAGTCCTCCAAGTCCTCATAATAATAACTCAGTAGGGTTCCAAACTTGGACTTCTCCGAATGTGGTTGTCAACATTTGTGGCCAAGACGCACAATTCAGTGTTTGCTCTTACAAGAACCGCTGCCTCTTCAGCAGCATCTGCTGTGTTCTCGAGAAGTATAAGATTGAGGTTTTGTCTTCTCACATTTCATGTGACAATAGTCGCAGGTTCTATATGTTTCAAGCACAGGTGAACAGAGATTCGGTTCAGCTTCCAGGGGCATTCTCAGCAGAAGAAACATTCAAGCAAGTTGCTGAAGAAATTATTCGGTGTCTCTCCTGA 747 0.4284 MSFADNREQEREIRSSCSDNSDKLMDKHSNSNRPSMTRGKEKRVTATGHEMDTIHRDRRKKIKTLFDSLQAMLPHVPKKADKVTVVDETLNYIRNLEETLKDLETKKKERLQSSVGSNVGNPSGTSREAFIAEQVASSSPTPSPPSPHNNNSVGFQTWTSPNVVVNICGQDAQFSVCSYKNRCLFSSICCVLEKYKIEVLSSHISCDNSRRFYMFQAQVNRDSVQLPGAFSAEETFKQVAEEIIRCLS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5790g00006 248 MobiDBLite consensus disorder prediction 1 53 - -
Pral5790g00006 248 Pfam Helix-loop-helix DNA-binding domain 56 97 IPR011598 GO:0046983
Pral5790g00006 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 107 IPR036638 GO:0046983
Pral5790g00006 248 Coils Coil 86 113 - -
Pral5790g00006 248 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 30 246 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pral5790g00006 248 SMART finulus 54 102 IPR011598 GO:0046983
Pral5790g00006 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Pral5790g00006 248 Gene3D - 49 118 IPR036638 GO:0046983
Pral5790g00006 248 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5790g00006 Pral-Chr5790 22651 23886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5790g00006 56 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.965 3.18e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5790g00006 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5790g00006 - - pcin:129293085 283.108