Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5790g00005 ATGTCTGCTAATCTCTCAAACTCAGATAACACTACTGGGGAAATCAGTAGTGTGCAAAGACCCTTGAGACAGAAGAGAGATATCAGCAAGGTTGATGGAGAAAATCATCATACCTCATTAGAGAGAGAAAGAAGGAAGAAGATAAGGTTGCATCTGAGAGAACTTCAAGATTTGGTCCCTTCTGTTCATCACATTAGGGCAGACCAGGCAACCATTGTTGAAGAAACTATTAAGTACATTAAAACCCTAGAAGATGTTGTTGAGAAGTTGGAGAAAATAAAGAGAGAGAGACTCCAATCTGCCTCCAATAATAATTCTGCTTATCCCACAGCCAGCCAAGGACCTCCCTCCATGGCCACTACTCATCAACTCACATCAGTTCCACAAAACCCCAAAGGGTTTCAAACTTGGGTTTTTCCAAATGTGGTAGTGAACATTTGTGGGGAAGAAGGTCAGTTCAGAATGTGCTATCCCAACAAGCCAGACCTCTACGGCGACATCGTTTGTGTTCTTCACAAGTATAACATTCAGGTTTTGTGTGTCACCATCTCAACTGATGATTATAAAACCTCGTACAAGATTCAAGCACGTGCAAATAAGCAGAATTCGGATCCAATTTCAGAGGCATTTTCAGTGGAGGAAGCATTCAAGAGAGCGGCAAGAGACGTATATCTTCTCTCTCCTATGTGA 690 0.4203 MSANLSNSDNTTGEISSVQRPLRQKRDISKVDGENHHTSLERERRKKIRLHLRELQDLVPSVHHIRADQATIVEETIKYIKTLEDVVEKLEKIKRERLQSASNNNSAYPTASQGPPSMATTHQLTSVPQNPKGFQTWVFPNVVVNICGEEGQFRMCYPNKPDLYGDIVCVLHKYNIQVLCVTISTDDYKTSYKIQARANKQNSDPISEAFSVEEAFKRAARDVYLLSPM 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5790g00005 229 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 16 224 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pral5790g00005 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 101 IPR036638 GO:0046983
Pral5790g00005 229 MobiDBLite consensus disorder prediction 98 126 - -
Pral5790g00005 229 MobiDBLite consensus disorder prediction 1 43 - -
Pral5790g00005 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 83 IPR011598 GO:0046983
Pral5790g00005 229 MobiDBLite consensus disorder prediction 20 43 - -
Pral5790g00005 229 Gene3D - 25 100 IPR036638 GO:0046983
Pral5790g00005 229 CDD bHLH_AtbHLH_like 37 91 IPR045239 -
Pral5790g00005 229 Pfam Helix-loop-helix DNA-binding domain 36 84 IPR011598 GO:0046983
Pral5790g00005 229 SMART finulus 38 89 IPR011598 GO:0046983
Pral5790g00005 229 MobiDBLite consensus disorder prediction 1 19 - -
Pral5790g00005 229 MobiDBLite consensus disorder prediction 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5790g00005 Pral-Chr5790 18743 19655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5790g00005 4 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 26.552 2.13e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5790g00005 HLH 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5790g00005 - - pcin:129293081 250.751