Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5790g00004 ATGGAGAAGCACTCTAAGTCTAATAAAGACCCTTCAATGACAAGAGGCAAGGAGAAGCTTGTCACTCGTAGTGATCATGAAATAGATGCTTCTGAGAGGGAGAGGCGTAAGAAAATCAAACAATTGTTTGGTAGCCTTCAAGCTATGCTCCCCCATGTTCCCAAGCAGGCAGACAAAGTGACAGTAGTGGATGAAACATTGAACTACATAAGAACTTTGGAGGAAACATTGAAAGATCTGCAAAAGAAGAAGCTGGAACGACTTCAATCTTCGTCTGTCGTCCCTAATAATAGTGTCGTAGCTGAACAAGTAGCTTCAATTCCTTCAAGTCCTCGTCGTAAAGGGTTTCAAACTTGGACTTCTCCGAATGTGGTAGTCAACATTTGTGGACAAGAAGCTCAATTCAGTGTATGCTCTTCCAAGAATTACTGCCTCTTCAGCACCATCTGCTGTGTTCTCGAGAAGTATAAGATTGAGGTTGTGTCTGCCCATATTTCATGTGACGATGGTCGCAGGTTCTATATGTTTCAAGCACAGGTGAACAGAGATTCGGTTAAGCTTCCTGGGGCATTATCAGCAGAGGAAACATTCAAGCAAGCTGCTGAAGAAATTATTCGGAGTCTCTCTTGA 630 0.4286 MEKHSKSNKDPSMTRGKEKLVTRSDHEIDASERERRKKIKQLFGSLQAMLPHVPKQADKVTVVDETLNYIRTLEETLKDLQKKKLERLQSSSVVPNNSVVAEQVASIPSSPRRKGFQTWTSPNVVVNICGQEAQFSVCSSKNYCLFSTICCVLEKYKIEVVSAHISCDDGRRFYMFQAQVNRDSVKLPGALSAEETFKQAAEEIIRSLS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5790g00004 209 CDD bHLH_AtbHLH_like 31 81 IPR045239 -
Pral5790g00004 209 Pfam Helix-loop-helix DNA-binding domain 30 74 IPR011598 GO:0046983
Pral5790g00004 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 84 IPR036638 GO:0046983
Pral5790g00004 209 SMART finulus 29 79 IPR011598 GO:0046983
Pral5790g00004 209 Coils Coil 63 83 - -
Pral5790g00004 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 73 IPR011598 GO:0046983
Pral5790g00004 209 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 7 205 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pral5790g00004 209 MobiDBLite consensus disorder prediction 1 35 - -
Pral5790g00004 209 Gene3D - 19 94 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5790g00004 Pral-Chr5790 16208 17063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5790g00004 25 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.755 8.43e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5790g00004 HLH 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5790g00004 - - pcin:129293085 262.307