Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5790g00002 ATGGCTCAAATGGTTTGTGGTTCTTGTCGCCGCCTTCTTTCATATCCACGAGGTGCTAGACATGTCAAGTGTTCCTGCTGTCAGACGATAAACCTTGTGTTGGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGAAGCTGTGCAGTTCTGCTAATGTACCCGTATGGCGCTTCACAAGTTAGGTGTTGCTCCTGCCAATTTGTGACGAAAATTGAGGAACACAATAAGCGGCCCCCATGGTCTGTACTGCAACTGCAAGGGAAACATACTCCTCCCAAATCAGTTACTTAG 291 0.4777 MAQMVCGSCRRLLSYPRGARHVKCSCCQTINLVLEADQVGQVKCGSCAVLLMYPYGASQVRCCSCQFVTKIEEHNKRPPWSVLQLQGKHTPPKSVT 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5790g00002 96 NCBIfam zinc finger domain, LSD1 subclass 3 33 IPR005735 -
Pral5790g00002 96 NCBIfam zinc finger domain, LSD1 subclass 41 70 IPR005735 -
Pral5790g00002 96 Pfam LSD1 zinc finger 6 30 IPR005735 -
Pral5790g00002 96 Pfam LSD1 zinc finger 44 68 IPR005735 -
Pral5790g00002 96 PANTHER PROTEIN LSD1 1 87 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral5790g00002 zf-LSD1 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5790g00002 - - pcin:129292659 198.364