Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5789g00011 ATGGACGAGTATTTGAGCAGCGATGACGATTATCATTACTCCGATCAGGGCTCCGTCGAAGGTTTCGAAAACGACGAGCCCGATATTCAGTTGGTTACTCCCAAGGGCCCCACAACTCTGGTGATTACAAGGGAATCACTTCTAGCTGCGCAGAAAGAAGATTTGCGTCTGGTAATGGAAATGCTATCATTAAGAGAGCACCATGCACGTACTCTGCTTATTTATCATCGTTGGGATGTGGAGAGGTTGTTTGCAGTGTATGTAGACAAGGGAAAAACTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACAGTGTGATCCTGACTCATCAGTTCCTTCTTCAGTCACATGCGAAATCTGCATAGAGGATGTTCCCAGTCATGAAGCGACAAGAATGGACTGTGGGCACTGTTTTTGCAACAGCTGTTGGACATCACACTTTATTGTCAAGATAAATGAGGGTCAAAGTAGACGTATAAGGTGCATGGCACACAAATGTAATGCTATTTGTGATGAAGCTGTTGTGAGAAATCTAGTCAGTAAAGAGAACCCTGATATGGCAGAGAAATTTGATCGCTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGTCCCAGCATCCCTCATTGTGGGAATGCAATACGTGTTGAAGATGACGAATTATGTGAGGTAGAATGTTCATGTGGTCTACAGTTCTGTTTTAGTTGCTTGTCAGAGACGCATTCCCCATGTTCTTGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAAACAGTTAATTGGATAGCAGTTCATACGAAACCTTGTCCAAAATGCCACAAGCCGGTGGAGAAGAATGGCGGTTGCAACCTGGTTAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTCTGTGGTGGAGCTACTGGGCGAGAACATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAACAGCTAGAGAAAACAGCTGAACGGGCGAAGCGAGATCTGTATCGATACATGCATTATCATAATCGCTATAAAGCTCACACAGATTCCTTTAAACTTGAAAGTAAATTGAAAGAGACTATACAGGACAAGGTTGCTATTTCAGAGGAGAGGGATTCTACGCTCAGGGATTTTAGTTGGGTGAATAATGGACTTTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGGCGGAAATAAAACAGCACTTATTTGAGGATCAGCAGCAACAGCTTGAGGCTAATGTTGAGAAGCTTTCCAAAATTCTGGAGGAACCATTTGACCAGTTTACAGATGATAAAGTTATGGAGATAAGGATTCAAGTCATTACCCTGTCAACCATTATTGACAATCTCTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAGTTGGGCACTCACAGTATTGCTCCGTACAAGTCCAAGGGCATAGAGAGGGCATCAGAACTTTCAACTTGTTGGAACTATAAAGCCAATAATGCTGGTGGAACAGCAGAACTTGATCGGCCCTCTGGGTCTGGGAGTTCAGATGATAGCGGATGTCCTTCTCACAAGCGTGCTAGGAAAGAAGGTGCTGGTGGTGTCCTTTTTGATCTAAACTTGCCAGCGGAGGTTGTAGACAGAAATTGA 1734 0.4314 MDEYLSSDDDYHYSDQGSVEGFENDEPDIQLVTPKGPTTLVITRESLLAAQKEDLRLVMEMLSLREHHARTLLIYHRWDVERLFAVYVDKGKTALFAEAGVSVDEQCDPDSSVPSSVTCEICIEDVPSHEATRMDCGHCFCNSCWTSHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKENPDMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQDKVAISEERDSTLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEEXEIKQHLFEDQQQQLEANVEKLSKILEEPFDQFTDDKVMEIRIQVITLSTIIDNLCQKMYECIENDLLGSLQLGTHSIAPYKSKGIERASELSTCWNYKANNAGGTAELDRPSGSGSSDDSGCPSHKRARKEGAGGVLFDLNLPAEVVDRN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5789g00011 578 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Pral5789g00011 578 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270
Pral5789g00011 578 SUPERFAMILY RING/U-box 260 317 - -
Pral5789g00011 578 Pfam Ariadne domain 331 578 IPR045840 -
Pral5789g00011 578 CDD BRcat_RBR_ANKIB1 197 261 - -
Pral5789g00011 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Pral5789g00011 578 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Pral5789g00011 578 MobiDBLite consensus disorder prediction 533 558 - -
Pral5789g00011 578 FunFam RBR-type E3 ubiquitin transferase 114 204 - -
Pral5789g00011 578 CDD Rcat_RBR_ARI1-like 274 326 - -
Pral5789g00011 578 Gene3D - 248 495 - -
Pral5789g00011 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 393 IPR031127 GO:0004842|GO:0016567
Pral5789g00011 578 SUPERFAMILY RING/U-box 190 258 - -
Pral5789g00011 578 FunFam RBR-type E3 ubiquitin transferase 248 495 - -
Pral5789g00011 578 SUPERFAMILY RING/U-box 116 202 - -
Pral5789g00011 578 CDD RING-HC_RBR_TRIAD1 117 170 - -
Pral5789g00011 578 SMART ibrneu5 190 252 IPR002867 GO:0008270
Pral5789g00011 578 SMART ibrneu5 260 325 IPR002867 GO:0008270
Pral5789g00011 578 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5789g00011 Pral-Chr5789 102081 105836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5789g00011 59 526 ARIADNE family AT2G16090 75.847 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5789g00011 K11968 - gmx:100783343 994.571