Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5787g00003 ATGGCAGAGGAGTTTGAAGCTGCTGGGATTTATGGTGGAAATTGGTGGAACATGAATACTTGTTCATCAAGAAGTGTGTTCCCTCTCATCACTTCATCTTCATCATCATCATCACTCTGTTCTATTGCAGCAAATCAAGATGGAGGCAACTTTAGTTGCGCTTGGCAAACTGATAGTCTCGTGGATCTCAAGTCGCCTTTAGTTTCTCATCATCATCATGATGCTCTGGGTTTTCTAGTTCAGCAGAAGCAAAACCATCAGAATGAATCATCACCTGATGCTTCTGAAAATAATGGAAAAATATTGATGGATTCCTCCTTGGGCTTTTCCAACTGGAATAACCACTCTTTACTTGGGAGACCAGAAAGCAATTTCGAATCTGTTCTTGAAGAAGAAGGTGGAGTAGATTCTTCGAATTCCGAAATGAAAACCATGAACCAAGAATTTGCCTTAGATCATCGTCAACAGAATCTGAGTTCTGCCTCATATGGCTATGGCCTGTGTGATGAGCACAATCCTCTTCATCATTTTCAACCACAGCCACAGCCAGAGGGCTCGCTTTTCACCAACCCTTCTTTGGCTTATAGTTATAGTTCAGCCAATCAAGCCTCGCCAAGTTGGTCCAAAGCCTCTGATCACTTTTTGAACCCTTCAATGCCAAAGCAGCAGCTGGGTGGATTCCACTTTTCAAACGACAATGATAATAATAATTCTCCTTTTTGGAATAATTCTTCAGCTGATCATCGAGCACTTGATGACGTACCAGCACCACAAGTGATTTTTGCTTCATCCCCACAATCTCAAACTTTTGAACACAAACCCAGTTGCTCAGCTCTCTTAACCAAGCACAAAAGAGAAGAGGCTCCTGTTAGTGAACCAGCTGCATTCAAAAGGCCCAGAATTGAAACTCCATCCCCACTGCCAACTTTTAAGGTTCGGAAAGAAAAGTTAGGGGACCGAATCACAGCTCTTCAGCAGTTGGTTTCACCTTTTGGAAAGACTGACACAGCATCAGTTCTTCACGAAGCCATCGAGTACATCAAGTATCTTCATGATCAAGTCAGCGTTTTGAGTGCTCCATATTTGAACAATGACAGACCTGCTGCCCAACACTATCAGGGTTGTGAAGAGAAAGAATCAAAAGGGGGAAAGCAAGATTTAAGAAGCCAAGGGTTGTGTTTGGCACCGATATCGAGCACCTTCTCACTTGCTAACTATGAGATGATGGCTTCTGAGTTATGGACGCATGCATATGGAGGAGCTTTCATCATCAGGTAG 1278 0.4304 MAEEFEAAGIYGGNWWNMNTCSSRSVFPLITSSSSSSSLCSIAANQDGGNFSCAWQTDSLVDLKSPLVSHHHHDALGFLVQQKQNHQNESSPDASENNGKILMDSSLGFSNWNNHSLLGRPESNFESVLEEEGGVDSSNSEMKTMNQEFALDHRQQNLSSASYGYGLCDEHNPLHHFQPQPQPEGSLFTNPSLAYSYSSANQASPSWSKASDHFLNPSMPKQQLGGFHFSNDNDNNNSPFWNNSSADHRALDDVPAPQVIFASSPQSQTFEHKPSCSALLTKHKREEAPVSEPAAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKYLHDQVSVLSAPYLNNDRPAAQHYQGCEEKESKGGKQDLRSQGLCLAPISSTFSLANYEMMASELWTHAYGGAFIIR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5787g00003 425 CDD bHLH_AtbHLH_like 307 358 IPR045239 -
Pral5787g00003 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Pral5787g00003 425 Gene3D - 311 366 IPR036638 GO:0046983
Pral5787g00003 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 363 IPR036638 GO:0046983
Pral5787g00003 425 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 121 402 - -
Pral5787g00003 425 FunFam Transcription factor bHLH123 family 311 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5787g00003 Pral-Chr5787 23715 26571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5787g00003 1 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 34.146 2.25e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5787g00003 - - pcin:129306484 626.32