Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5786g00023 ATGAGTTTCCCAGAAAAAGATAGAGAGAAGAACATGATGATGAACAAGAAAGAGAGAGGTTCAATACTTGAAATATTCAGATATGCTGAGTGGACTGATGTAATGCTTATGTTGTTGGGTGCTTTGGGAGCAATAGGAGACGGCATGTCCACAAACGTTTTGCTTGTGTTTGCTAGCCGCATCATGAACAGCTTAGGTCATGGGAATACTCAAAAACAAACTAATGGTGGGAATTTTTCCATGGCCGAGGTTGAGAAGTGCAGCTTATATTTTGTGTACTTGGGATTAGCAGTCATGGCGTTAGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGGCAGGTGTTGAGAATTCGGTACAAGTATTTGGAAGCCGTGCTGAGACAAGAAGTGGGATTCTTCAATTCACAAGAAGCAACTACTTCAGACATCATAAACAGCATATCAAAGGATACTTCTCACTTCCAAGAACTTCTCAGTGAAAAGGTGCCTCTATTTTTGATGCATTCATCATCATTCATCTCAGGGATCGCCTTCTCAACGTACTTCTCATGGAGACTGGCCATATTATCCTATCCAACACTGCTTCTTCTGATAATACCGGGAATGCTTTATGGGAAATACCTAATCTACTTGTCAAACAAGTCCCACAAAGAGTATGGCAAGGCAAACGCCATTGTAGAGCAGGCTTTAAGCTCTATAAAGACTGTTTATTCGTTCACAGCAGAGACAAGAATCATGGAGAGATATTCTGCAATACTTGACAGAATTTCAAAGCTTGGAATCAAACAAGGCATAGCCAAAGGTTTGGCTGTGGGAAGCACTGGCTTGTCCTTTGCTATATGGGCGTTTCTGGCTTGGTATGGAAGTCGTTTGGTTATGTACAAGGGTGAAAGTGGAGGAAGGATTTATGCAGCTGGAATTTCCTTCATCATGAGTGGGCTATCACTTGGAGTTGCACTTCCTGACCTTAAGCACTTCACAGAAGCATCTGTTGCAGCATCAAGATTATTTGATATGATTGACAGAATACCAACAATTGATAGTGAAGACACAAGAGGACTTGTGTTAGATTGCATAACTGGCAAGTTAGAGTTTGAGCATGTGAAATTCACCTACCCCTCACGTCCAGATACAATTGTTCTTGAGGATTTCAATCTCACAGTTGAAGCTGGCACAACTGTGGCTCTTGTTGGTGCAAGTGGGAGTGGTAAATCCACAGCAATAGGATTAGTACAGAGATTTTATGATGCAGATGAAGGTTTTGTGAAGGTTGATGGTGTAGACATAAGAAGCCTACAATTGAAATGGATAAGAGGAAAAATGGGACTTGTGAGTCAAGAGCCAGCACTATTTGGGACTTCAATAAAGGAGAATATTATGTTTGGTAAGCCAGATGCTACAATGGAGGAAGTAATTGCTGCAGCCATGGCTGCCAATGCTCATAACTTCATCAGGCAGCTTCCTGAAGGTTATGAAACTAAAATTGGAGAAAGAGGGGCTCTTCTATCAGGTGGACAAAAGCAGAGAATAGCTATTGCAAGAGCCATCATTAAGAATCCTGTGATTCTCCTTCTTGATGAAGCAACTAGTGCTCTTGATTCTGAATCAGAACTACTAGTTCAGAATGCACTTGATCAGGCCTCCATGGGAAGGACCACTTTGGTTGTTTCTCACAAGCTATCAACAGTTAGAAATGCAGACCTCATAGCAGTTGTCAATTGTGGCTGCATCATCGAAACAGGAACTCACAATGAACTCCTCAACAGCGAAGATGGGCACTATGCTAAACTAGCAAAGTTGCAATTCAGTTGTGATGAACATTTGCAGAACCCGGACCAGATTATTTCTTCTGTAGCAAGAAGCAGTGCTGGTAGACCAAGTACTGCAAGGTCAAGCCCTTCAATTTTCCCAAAATCACCATTGCCTGATGCTACCCCACCACTTGAGTCTCACCCTCCACCTTCTTTACCACGTCTTCTTTCTCTGAATGCTCCTGAATGGAAACAAGGTCTGGTTGGAAGCCTCTCAGCTGTAGCCTTTGGCTCAATTCAACCCATATATGCCTTAACCATTGGGGGTATGATTTCTGCATTTTTTGTTGAAAGCCATGAGGAAATGCGTCATAGGATTAGAACTTATTCCTTTATTTTCTCTTCATTATCCCTTGCTTCTATAATTCTCAATCTCTTCCAACACTATAATTTTGCCCATATGGGAGAGAAATTAACAAAGAGGGTCAGATTACAAATGCTAGAAAAGATCTTAACCTTTGAAACTGCCTGGTTTGATGAGGAACGAAACTCTAGTGGGGCCTTATGTTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAGTCACTCGTTGCGGATCGCGTCTCTTTAATGGTTCAAACCACTTCTGCTGTAACAATTGCAATGATCATAGGGCTTATTGTGGCTTGGAAGCTTGCACTTGTTATGATAGCTGTACAACCACTGACAATACTTTGTTTCTATACAAGAAAAGTGTTGCTCTCCACACTTTCAACTAATTTTGCCAAGGCTCAGAATCATAGCACACAAATTGCAGTAGAAGCTGTTTATAATCATAAAATTGTAATTTCCTTTGGAAGCAACAAGAAAGTTGTACAACTATTTGATGAAGCTCAAGAGGCACCAAGGAAGGAAGCCAGAAAGAAGTCTTGGCTAGCCGGGATTGGAATGGGTTCGGCTCAGTGCCTAACTTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGGACATTAGTTAAGAAAGGAGAAATATCAGCGGGGGATGTGTTCAAGACATTTTTTGTATTGGTGAGCACAGGCAAAGTCATAGCTGAAGCTGGAAGCATGACTTCTGATCTTGCCAAGGGTTCAGCAGCAGTGGCATCTGTTTTTGCGATTCTCGATAGACAATCATTAATCCCAAAGGGGGTGCAAATTGATCAAATAAGAGGAAAGATAGAGATGAAAGATGTTGATTTTGCTTACCCAAGCAGGCCAGGGACTCCAATACTGAGAAAATTTTGCTTGGAGGTGAAGTCAGGAACAAGCATAGGAGTAGTAGGGAAAAGTGGGAGTGGAAAATCAACAGTGATAGCTTTAATTCAGAGATTCTATGATGTTCAGAGAGGGTCTATCAAAGTGGACGGTATAGACATAAGAGAACTAGACATTCAGTGGTACAGGAAACACACAGCACTGGTTAGCCAAGAACCTGTAATCTACTCAGGAAGCATACGAGACAACATCTTATTTGGAAAGCAAGAAGCAACAGAAGGTGAAGTTGTGGAAGCTGCAAGAGCTGCTAATGCTCATGACTTCATTTCGTCACTGAAAGATGGGTATGAAACAGAATGTGGAGAAAGAGGAGTACAACTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGAGCCATAATTAGAAACCCAACAATACTTCTGCTAGATGAAGCAACCAGTGCCTTAGACGTTGAATCAGAACAAGTGGTACAAGAAGCACTTGATAGAATAATGGTCGGTAGAACTACCATCGTGGTGGCACACAGACTTAACACCATTAAGGAGCTTCAATCCATTGCCTATGTTTCAGACGGCAAGGTTCTTGAACAAGGAACCTATTCACAGCTTTGGCACAAGAAAGGCGCTTTCTTCAACCTTGCTAGCCATCAATCTTAA 3693 0.4197 MSFPEKDREKNMMMNKKERGSILEIFRYAEWTDVMLMLLGALGAIGDGMSTNVLLVFASRIMNSLGHGNTQKQTNGGNFSMAEVEKCSLYFVYLGLAVMALAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFNSQEATTSDIINSISKDTSHFQELLSEKVPLFLMHSSSFISGIAFSTYFSWRLAILSYPTLLLLIIPGMLYGKYLIYLSNKSHKEYGKANAIVEQALSSIKTVYSFTAETRIMERYSAILDRISKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSRLVMYKGESGGRIYAAGISFIMSGLSLGVALPDLKHFTEASVAASRLFDMIDRIPTIDSEDTRGLVLDCITGKLEFEHVKFTYPSRPDTIVLEDFNLTVEAGTTVALVGASGSGKSTAIGLVQRFYDADEGFVKVDGVDIRSLQLKWIRGKMGLVSQEPALFGTSIKENIMFGKPDATMEEVIAAAMAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVSHKLSTVRNADLIAVVNCGCIIETGTHNELLNSEDGHYAKLAKLQFSCDEHLQNPDQIISSVARSSAGRPSTARSSPSIFPKSPLPDATPPLESHPPPSLPRLLSLNAPEWKQGLVGSLSAVAFGSIQPIYALTIGGMISAFFVESHEEMRHRIRTYSFIFSSLSLASIILNLFQHYNFAHMGEKLTKRVRLQMLEKILTFETAWFDEERNSSGALCSRLSNEASMVKSLVADRVSLMVQTTSAVTIAMIIGLIVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTNFAKAQNHSTQIAVEAVYNHKIVISFGSNKKVVQLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVKKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKGSAAVASVFAILDRQSLIPKGVQIDQIRGKIEMKDVDFAYPSRPGTPILRKFCLEVKSGTSIGVVGKSGSGKSTVIALIQRFYDVQRGSIKVDGIDIRELDIQWYRKHTALVSQEPVIYSGSIRDNILFGKQEATEGEVVEAARAANAHDFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVESEQVVQEALDRIMVGRTTIVVAHRLNTIKELQSIAYVSDGKVLEQGTYSQLWHKKGAFFNLASHQS 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5786g00023 1230 MobiDBLite consensus disorder prediction 642 657 - -
Pral5786g00023 1230 FunFam ABC transporter B family member 4 356 610 - -
Pral5786g00023 1230 SUPERFAMILY ABC transporter transmembrane region 25 350 IPR036640 GO:0005524|GO:0016020
Pral5786g00023 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 605 IPR027417 -
Pral5786g00023 1230 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524|GO:0016887
Pral5786g00023 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1229 IPR027417 -
Pral5786g00023 1230 CDD ABC_MTABC3_MDL1_MDL2 992 1229 - -
Pral5786g00023 1230 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5786g00023 1230 FunFam ABC transporter B family member 1 24 359 - -
Pral5786g00023 1230 Pfam ABC transporter 1013 1159 IPR003439 GO:0005524
Pral5786g00023 1230 CDD ABC_MTABC3_MDL1_MDL2 367 604 - -
Pral5786g00023 1230 FunFam ABC multidrug transporter SitT 982 1230 - -
Pral5786g00023 1230 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524|GO:0016887
Pral5786g00023 1230 CDD ABC_6TM_Pgp_ABCB1_D2_like 663 979 - -
Pral5786g00023 1230 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5786g00023 1230 PANTHER ABC TRANSPORTER B FAMILY 8 686 IPR039421 -
Pral5786g00023 1230 SMART AAA_5 393 585 IPR003593 GO:0016887
Pral5786g00023 1230 SMART AAA_5 1019 1211 IPR003593 GO:0016887
Pral5786g00023 1230 Pfam ABC transporter transmembrane region 678 944 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5786g00023 1230 Pfam ABC transporter transmembrane region 40 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5786g00023 1230 Pfam ABC transporter 384 533 IPR003439 GO:0005524
Pral5786g00023 1230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Pral5786g00023 1230 MobiDBLite consensus disorder prediction 622 638 - -
Pral5786g00023 1230 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 339 - -
Pral5786g00023 1230 FunFam Putative ABC transporter B family member 8 639 983 - -
Pral5786g00023 1230 Gene3D ABC transporter type 1, transmembrane domain 24 901 IPR036640 GO:0005524|GO:0016020
Pral5786g00023 1230 MobiDBLite consensus disorder prediction 622 658 - -
Pral5786g00023 1230 Gene3D - 982 1230 IPR027417 -
Pral5786g00023 1230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1228 IPR003439 GO:0005524
Pral5786g00023 1230 SUPERFAMILY ABC transporter transmembrane region 656 974 IPR036640 GO:0005524|GO:0016020
Pral5786g00023 1230 Gene3D - 356 616 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5786g00023 Pral-Chr5786 177353 185168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5786g00023 91 604 Calmodulin-binding Proteins AT2G36910 37.572 2.92e-100 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5786g00023 K05658 - gmx:100801088 1930.99