Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5786g00003 ATGAACCATCTGGGTTTTCATCTTTTGGTTCTGTATCTGATATTCTTCAGATTTTCCTGTGAAGCACAGGTTTCAAATAGTGCTCCTTCACAAGATGCTGTGTCAAATTTCCGACCAAGTCTTGCTGTTGTCATTGGGATTCTCAGTTTCATGTTTGTTCTAACATTCTCTCTCCTCATGTATGCCAAGTGCTGTACCAGAGGAGCTTCATCAGTTCATGGCAACCCAGAAAGTCAACCTTGGCTTATCAGAACAAGGTCAACAAGATTCTCAGGAATCGACAAGACTGTCATAGAATCACTTCCCTTCTTCAGATTCTCCTCCTTAAAAGGATCAAAAGAAGGCCTTGAATGTGCTGTTTGCTTGTCCAAGTTTGAAGATGTTGAGATTCTCAGGCTGCTTCCAAAGTGTAAACATGCTTTTCACATTAATTGTATTGATAATTGGCTTGAGAATCATTCTAGTTGTCCTCTTTGTAGACACAGGGTTGATCCTGAAGATCAAACCATTTTCACATATTCTAACAGCTTGAGACTGCTCATCAATGGCGGCCCAGCAGAATTGGGAGAAGAATCCAATGTAGGGCTTTTTGTTCAGAGAGAAGAAGAAGAAGAACAAAATGGGTCATCATCAAGAATCAATTTTGGAAGCAGCTTTAGGAGAATCCTGAAGGGTTCTTCAAAAGAAGAAGAATTACCTATTCAAAAGCCAGCTCATGATGATGATGATCACAGAAAGGTCTATCACAAACTCAAACACAGGATTACTGTATCAGATTTTGTTTTGAAGAATCGATGGAGCAACGTGAGTTCCTCAGACCTCATGTTCTTGAACTCAGAGATGATTGGTTCTACTTCAAGTGTAAGATTCAACAGTTCTGAATCTCAAGGAGAATCAGGAAATGAGCAGCCTATGAATCTCAAGGAGGAGATGGAGAGGAAGGTTTCATTTGAAAACAAAGTGAGGAATGGACTAAAGAACAACAACAATCTAAATTCTGGTTCAGATTCTGCAGGAAAATTGAGTGCAACATCAAAGTATATGAATCCAGATGAGAAAAGATCAGTATCAGATATAACTGCCGTCTCTAGATTTGAAGCTTTGGGCATGAAAAATGGGACCCTTAATAAAGGTTCTTATTCATCTTTGGTTGATCAGAACAATGTGAAAGAGGAACGAGTGAGACAGATTTGGCTGCCAATTGCCAAAAGAACAGTTCAATGGTTTGTGAACAGGGAAAAAAGGTTTCAACAATCTCTGAATGTATAG 1269 0.3924 MNHLGFHLLVLYLIFFRFSCEAQVSNSAPSQDAVSNFRPSLAVVIGILSFMFVLTFSLLMYAKCCTRGASSVHGNPESQPWLIRTRSTRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHINCIDNWLENHSSCPLCRHRVDPEDQTIFTYSNSLRLLINGGPAELGEESNVGLFVQREEEEEQNGSSSRINFGSSFRRILKGSSKEEELPIQKPAHDDDDHRKVYHKLKHRITVSDFVLKNRWSNVSSSDLMFLNSEMIGSTSSVRFNSSESQGESGNEQPMNLKEEMERKVSFENKVRNGLKNNNNLNSGSDSAGKLSATSKYMNPDEKRSVSDITAVSRFEALGMKNGTLNKGSYSSLVDQNNVKEERVRQIWLPIAKRTVQWFVNREKRFQQSLNV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5786g00003 422 Coils Coil 308 328 - -
Pral5786g00003 422 FunFam RING-H2 finger protein ATL43 93 167 - -
Pral5786g00003 422 Pfam Ring finger domain 117 160 IPR001841 -
Pral5786g00003 422 SMART ring_2 118 159 IPR001841 -
Pral5786g00003 422 SUPERFAMILY RING/U-box 97 166 - -
Pral5786g00003 422 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Pral5786g00003 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 169 IPR013083 -
Pral5786g00003 422 MobiDBLite consensus disorder prediction 323 345 - -
Pral5786g00003 422 CDD RING-H2_EL5-like 117 160 - -
Pral5786g00003 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5786g00003 Pral-Chr5786 19003 20489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5786g00003 11 417 C3H Transcription Factor Family AT4G28890 48.165 2.05e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5786g00003 K10664 - gmx:100803207 478.789