Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5784g00001 ATGAGTTCGGCATTCATCATAGTTATATATTTACTATGGCTTGCATCAACATTGACACTCGTAAGTGGAGCATCAAGAAAAGTAGCCTCAAACCCTGAGGTTGTGAATATTGGAGCTGTTTTCACATTTAAAACTATAAATGGACGAGTTTCTAAGATTGCCATCAAAGCTGCAGAGAAAGATGTGAATTCCGATCCACGTATCCTTGGTGGACGCAAATTGAACATAACCCTGCATGATTCCAACTTCAATGGTTTTCTTGGCTTCATTGGAGCGCTCAAGTTCTTGGAGAGAGACTCGGTTGCTATCATTGGTCCACAAAGTTCAGTAATGGCCCCTGTGCTCTCGCATTTGGCAAATGAACTCCATGTTCCTCTTCTGTCATTTACAGCTCTGGATCCTACCCTGTCACCTCTGCAGTACCCTTATTTTCTGCAAACAGCTCCCAATGATCAATTCCAGATGACTGCAGTGGCAGACATGATTAGCTATTTTGGTTGGAGAGAGATTATTGCTGTTTATAGTGATGATGATCAAAGTCGAAATGGGATCACTGTATTGGGAGATAAACTTGCTGAAAGGCGGTGTAAGATATCTTACAAAGCAACACTGCCCCCTGATCCAACTGCTAGTCGAAATGATATTACTATTCAGTTGACCAAGGTTCGAAGTATGGAGTCCAGAGTGATTGTTCTTCACACCTTCTCCCTGACAGGTCTCTTGGTTTTTGATGTGGCTCAGAAATTAGGAATGATGAATGAAGGTTATGTCTGGATAGCATCTTCTTGGTTATCAACTGTTTTAGACTCAACTTCACCACTTTCTTTGAATACTTCTAACTCAATCCAAGGAGTTCTTACACTTCGCCCTCACACCCCGCAATCAAAAAGAAAACAGACCCTTATGTCCAGGTGGAACCAGATAAGTAATGGTTCAGTTGGGTTGAATCCATATGGCCTCTATGCTTATGATTCTGTTTGGATCATTGCTCTTGCGTTGAAATCATTTTTTGATCAGAATGGTAATCTTTCATTCTCTAACAACACAATTCTAAACAGTATGAGAGGGGAGACTCTGGATCTTGGTGCACTGAGCGTTTTTAATGGAGGGAAACAATTGCTTGATAACATACTGCGCATTAACATGACTGGATTGACAGGACCTATTCAATTTGGTTTAGATAGATCCCCCTTAAATCCATCATATGACATCCTCAACGTAATCAATAGTAGTTATAGGAAAATCGGGTACTGGTCTAATTATTCTGGGCTATCTGTTATTCCTCCAGAGAAACTTCACACTAAGCGAGCCAACCGATCAATTTTAAACCAACATCTGTCCAATATAACTTGGCCTGGTGGTACAACAGAAAAGCCTCGGGGATGGGTTTTTCCAAATAACGGAAGACAGCTAAGAATCGGCATCCCCAATCGAGTTAGTTATCAGAACATGGTCTCGCAAATAAATGGTACCAATAAAGTTCAAGGATACTGCATAGATGTCTTCCTGGCTGCCATTAAATTGCTACCATATGCAGTTCCATACAAGTTTGTTCTGTTTGGAGATGGACATGAGAACCCCAACTACTATGAACTTGTCAATAAGATTAATTCTGATGTGTTTGATGCTGCTGTAGGTGACATTGCCATTGTCACTGACAGAACAAAGATTGCAGATTTCACTCAACCATATATAGAGTCAGGACTTGTTGTTGTTACCAAAGTAAAACAATTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCTTTTACTCCATTAATGTGGGCTGTCACAGCTGTTTTCTTCCTCATTGTTGGAGCAGTTGTGTGGATTCTTGAACATAGAACAAACGATGAGTTCCGGGGGCCTCCTAGGAAACAAGTTGTTACAGTTCTTTGGTTTAGCCTCTCTACCATGTTCTTTGCACACAGAGAGAACACAGTTAGTGCACTTGGTCGTATTGTGCTAATCATTTGGCTTTTTGTGGTCCTGGTAATCAATTCAAGTTATACTGCAAGCCTAACGTCAATTCTCACTGTGCAACAACTTTCCTCACCAATAACAGGAATTGATACATTGATAACCAGTAATGAACGTATAGGCTTTCAAGTAGGATCATTTGCTGAAAACTATCTTAGTCAGGAACTCAACATCCCGAAATATAGGCTTATTCCTCTTGGTTCACCAGAAGAATATGCTATTGCTCTCGAGAAGGGAACTGTCGCAGCTGTTGTTGATGAACGACCATATGTTGAACTCTTCATGGCAAATCACTGCAAATTCTCCATTAGAGGCCAAGAATTCACCAAAAGTGGATGGGGATTTGCGTTCCCAAGGGACTCTCCTTTATCCATTGATATGTCAACTGCCATTCTTACTCTGTCTGAAAATGGTGAACTCCAGAAGATTCATGAGAGGTGGCTCTCGACACGGGCCTGTGAGTTTAAGGGTACAGAGGAGGGATCTGAGCAACTTCAGTTACAAAGCTTTTGGGGCCTGTTCATGTTATGTGGGATAGTAAGTTTGGTAGCGCTTCTTGTCTATTTCATCTTGATGGTTCAACAATTCTGCCGTGACTTCCCCAAAAATGGCGAGCCCTCCAATGGTAGCAGCTCACGCTCTGTTCGCATCCAAACGTTTCTAAGTTTTGCTGATGAAAAAGAAGACATGTCACAAAGAAAGCTTAAAAGAAAACGCAAGGATTTTTCATAG 2709 0.4134 MSSAFIIVIYLLWLASTLTLVSGASRKVASNPEVVNIGAVFTFKTINGRVSKIAIKAAEKDVNSDPRILGGRKLNITLHDSNFNGFLGFIGALKFLERDSVAIIGPQSSVMAPVLSHLANELHVPLLSFTALDPTLSPLQYPYFLQTAPNDQFQMTAVADMISYFGWREIIAVYSDDDQSRNGITVLGDKLAERRCKISYKATLPPDPTASRNDITIQLTKVRSMESRVIVLHTFSLTGLLVFDVAQKLGMMNEGYVWIASSWLSTVLDSTSPLSLNTSNSIQGVLTLRPHTPQSKRKQTLMSRWNQISNGSVGLNPYGLYAYDSVWIIALALKSFFDQNGNLSFSNNTILNSMRGETLDLGALSVFNGGKQLLDNILRINMTGLTGPIQFGLDRSPLNPSYDILNVINSSYRKIGYWSNYSGLSVIPPEKLHTKRANRSILNQHLSNITWPGGTTEKPRGWVFPNNGRQLRIGIPNRVSYQNMVSQINGTNKVQGYCIDVFLAAIKLLPYAVPYKFVLFGDGHENPNYYELVNKINSDVFDAAVGDIAIVTDRTKIADFTQPYIESGLVVVTKVKQLKSSAWAFLRPFTPLMWAVTAVFFLIVGAVVWILEHRTNDEFRGPPRKQVVTVLWFSLSTMFFAHRENTVSALGRIVLIIWLFVVLVINSSYTASLTSILTVQQLSSPITGIDTLITSNERIGFQVGSFAENYLSQELNIPKYRLIPLGSPEEYAIALEKGTVAAVVDERPYVELFMANHCKFSIRGQEFTKSGWGFAFPRDSPLSIDMSTAILTLSENGELQKIHERWLSTRACEFKGTEEGSEQLQLQSFWGLFMLCGIVSLVALLVYFILMVQQFCRDFPKNGEPSNGSSSRSVRIQTFLSFADEKEDMSQRKLKRKRKDFS 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5784g00001 902 Pfam Receptor family ligand binding region 53 408 IPR001828 -
Pral5784g00001 902 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 872 IPR015683 -
Pral5784g00001 902 Gene3D - 466 581 - -
Pral5784g00001 902 SUPERFAMILY Periplasmic binding protein-like II 448 807 - -
Pral5784g00001 902 CDD GluR_Plant 469 807 - -
Pral5784g00001 902 Pfam Ligand-gated ion channel 809 838 IPR001320 GO:0015276|GO:0016020
Pral5784g00001 902 SMART AABind_6 470 810 IPR001638 -
Pral5784g00001 902 FunFam Glutamate receptor 708 811 - -
Pral5784g00001 902 SUPERFAMILY Periplasmic binding protein-like I 30 463 IPR028082 -
Pral5784g00001 902 Gene3D - 582 713 - -
Pral5784g00001 902 FunFam Glutamate receptor 150 310 - -
Pral5784g00001 902 Pfam Bacterial extracellular solute-binding proteins, family 3 489 808 IPR001638 -
Pral5784g00001 902 Gene3D - 53 399 - -
Pral5784g00001 902 FunFam Glutamate receptor 466 582 - -
Pral5784g00001 902 FunFam Glutamate receptor 582 712 - -
Pral5784g00001 902 PIRSF IGluLR_plant 2 901 IPR017103 -
Pral5784g00001 902 Gene3D - 150 424 - -
Pral5784g00001 902 Gene3D - 734 814 - -
Pral5784g00001 902 SMART GluR_14 470 809 IPR001320 GO:0015276|GO:0016020
Pral5784g00001 902 CDD PBP1_GABAb_receptor_plant 36 428 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5784g00001 Pral-Chr5784 16158 21078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5784g00001 23 900 Ion Channels AT2G17260 62.655 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5784g00001 K05387 - qsu:112010597 1331.62