Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5783g00002 ATGCCAACAACGATCTTCTCCTGCAACTACTGTCACAGAAAATTCTACAGCTCGCAGGCACTTGGGGGACACCAAAACGCACACAAGCGTGAGAGAACTCTGGCCAAAAGAGGACACAACAACAACGTTGGTGGTTCTGCTTCACATGTTTCTGCAGATTTTGGACAAAGGTATTATTATTCATGTATGGCTTCTCTTCCTTTGCATGGCTCCTCCCATAACAGACCACTCGGGATTCAAGTTCATTCCATGATTCACAAGCCCTTCTCTACTTCTTCTTTTCAACCACGTCGTTTCCAGAAGAATCATCCATTATCCGGGGCTTCCTATGTTTGGACAGGAACTGAATCATCATCAGCTTCTTTAACTTCTGGGACTCCAAAGTTTTCTCCAAGGCCTGTCACAGAGGAACTTCACAAACTTGACTTGTCCCTCAGACTGTGA 444 0.4527 MPTTIFSCNYCHRKFYSSQALGGHQNAHKRERTLAKRGHNNNVGGSASHVSADFGQRYYYSCMASLPLHGSSHNRPLGIQVHSMIHKPFSTSSFQPRRFQKNHPLSGASYVWTGTESSSASLTSGTPKFSPRPVTEELHKLDLSLRL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5783g00002 147 Gene3D Classic Zinc Finger 2 55 - -
Pral5783g00002 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Pral5783g00002 147 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Pral5783g00002 147 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 108 IPR044246 GO:0009788
Pral5783g00002 147 SUPERFAMILY beta-beta-alpha zinc fingers 4 33 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5783g00002 Pral-Chr5783 65895 66724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5783g00002 5 88 C2H2 Transcription Factor Family AT1G80730 64.773 4.70e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5783g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5783g00002 - - pcin:129287570 214.157