Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5777g00018 ATGGCCTTGCGGGGAACGGAGAACGCATACGACGATCCAAATCTTGCGGACAATGAACAAGAGGAATTCTCCGAATCCTTTGTTTGCTGCGTTTGCCTGGATCTATTATACAAGCCCATTGTACTGTCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCATCAGTCAATGAGCCCCCTTTGTGAGTCTCATTGTCCAATTTGTAGGCATCCATATTATCACTTTCCAACAATCTGTTGGATGCTTCACTTTTTGCTTCAGAAGATGTATCCTGCTGCTTACAAGAGAAGGGGAATTCAAACTCTTGAGGAAGAAAAGAAAGGGGGCTACTACTCTCCTCAATTTGATGGTGATAATCTTGTGTCAGAAGTCAAGTTTGATCGTCCAGGTACTTCATCTTCCTGCTATGCTGGAAATCTGGTTTCCAACCCGCAGAATGCCGGACTCTCTGCAAGTATGGAGCAATCAGGGTCTGAAACTCTAAAGCGACATAACGGAACCATCTGTTCTAAAGATGTTTTTGGTGGAACTCCTGAAGCTCTCGGGACTCCTGCTCAAGCAAAAGTGCTGCCTCAGACCGACCGGCAGCAAAAGATATCAGCTGCAGATGTGGTGTGTTCAACATGCAAGCAACTGCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCGTGCATCAAGAACTCGACTGATGAGATGCTTAGATGCCAAATTTGTCAACTCCCACATCCAAGGGGATTTCCAAAAGTTTGTTTGGTGCTTGATCACTTTATAAAGGAACAATTTCCTGAGGAATATGCAAAGCAAAGAGATGCTGTTCAACTCAGGCATATCAACGATAAACCTGAGACCCCTTCTTGTTCATTGAACAAGGGTGGAGGAGGAAAAGCAGCATGGTGGTCTGATCCTCACTCAAAAGTACATGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGGAGATTGGTTTTGATCTTTGCGCTGATTGTTATAAAATTCGCAGCAAGATTCCTGGTCGGTTCAATCAGCAGCACACTCCAGATCACGAGTTTGAGCTTAAACAAATTAGCATTATCCATAACATAATGAGGCTGGTTACTGGACAGTTAGGAGATGGTTCCATTGAAAACTTGGCTATGGAAAGCTTAGGGTTTGGACCTGAAGGTCCCAATTTGGCTGTTGATGCTGATGAAGAACATGCCCAGAATGACTCCGAAGGCACCAATTGA 1281 0.4395 MALRGTENAYDDPNLADNEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHQSMSPLCESHCPICRHPYYHFPTICWMLHFLLQKMYPAAYKRRGIQTLEEEKKGGYYSPQFDGDNLVSEVKFDRPGTSSSCYAGNLVSNPQNAGLSASMEQSGSETLKRHNGTICSKDVFGGTPEALGTPAQAKVLPQTDRQQKISAADVVCSTCKQLLFHPVVLNCGHVYCESCIKNSTDEMLRCQICQLPHPRGFPKVCLVLDHFIKEQFPEEYAKQRDAVQLRHINDKPETPSCSLNKGGGGKAAWWSDPHSKVHVGVGCDFCGMFPIVGDRYRCKDCKEEIGFDLCADCYKIRSKIPGRFNQQHTPDHEFELKQISIIHNIMRLVTGQLGDGSIENLAMESLGFGPEGPNLAVDADEEHAQNDSEGTN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5777g00018 426 FunFam E3 ubiquitin-protein ligase PRT1 306 371 - -
Pral5777g00018 426 PANTHER UNCHARACTERIZED 19 375 - -
Pral5777g00018 426 SMART zz_5 311 357 IPR000433 GO:0008270
Pral5777g00018 426 ProSiteProfiles Zinc finger ZZ-type profile. 312 376 IPR000433 GO:0008270
Pral5777g00018 426 SUPERFAMILY RING/U-box 18 78 - -
Pral5777g00018 426 ProSitePatterns Zinc finger ZZ-type signature. 317 347 IPR000433 GO:0008270
Pral5777g00018 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 97 IPR013083 -
Pral5777g00018 426 MobiDBLite consensus disorder prediction 406 426 - -
Pral5777g00018 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 290 IPR013083 -
Pral5777g00018 426 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Pral5777g00018 426 SMART ring_2 206 243 IPR001841 -
Pral5777g00018 426 SMART ring_2 29 68 IPR001841 -
Pral5777g00018 426 Gene3D - 305 371 IPR043145 -
Pral5777g00018 426 Pfam RING-type zinc-finger 206 237 IPR027370 -
Pral5777g00018 426 SUPERFAMILY RING/U-box 304 369 - -
Pral5777g00018 426 MobiDBLite consensus disorder prediction 410 426 - -
Pral5777g00018 426 SUPERFAMILY RING/U-box 203 266 - -
Pral5777g00018 426 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Pral5777g00018 426 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Pral5777g00018 426 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Pral5777g00018 426 FunFam E3 ubiquitin-protein ligase PRT1 193 288 - -
Pral5777g00018 426 Pfam Zinc finger, ZZ type 312 350 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5777g00018 Pral-Chr5777 55235 61910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5777g00018 14 69 C3H Transcription Factor Family AT1G74990 38.596 1.12e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5777g00018 - - gmx:100782681 538.88