Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5777g00016 | ATGGCCTTGCAGGGAACGGAGAACGCTTACGAAGATCCAAATCTTGCCGACGATGAACAAGAAGAATTCTCCGAATCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCTATTGTACTGTCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCATCAGTCAATGAGCCCCCTTTGTGAGTCTCATTGTCCAATTTGTAGGCGTCCATATTATCACTTTCCAACAATCTGTTGGATGCTTCACTTTTTGCTTCAGAAGATGTATCCTGCTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGAAGAAAAGAAACGGGGCACTTTCTCTCCTCAAATTGATGGTGATAATCTTGCGTCAGACGTCAAGTTTGATCATCCAGGTACTTCATCTCCCTGCTATGCTGGAAATCTGGTTTCCAACCCGCAGAATGCCGGACTCTCTGCAAGTATGGAGCAATCAGGGTCTGAAACTCAAAAGCAAAATAACGGAAACATCTGTTCTAAAGATGTTTTTGGTGGAACTCCTGAAGATTTTGGCACGCCTGCTCAAGTAAAAATGCTGCCTCAGACCGATCGGCAGGAAAAGATATCAGCTGCAGATGTGGTGTGTTCAACATGCAAGCAACTGCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGCATCAAGAACTCAACTGATGAGATGCTTAGATGCCAAATTTGTCAACTCCCACATCCAAGAGGATTTCCAAAAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTCCCTGAGGAATATGCAAAGCAAAGAGATGCTGTTCAACTGAGGCATATCAACGATAAACGTTCATTGAACGAGGGTGGAGGAGGAAAAGCAGCATGGTGGTCTGATCCTCACTCAAAAGTACATGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGAAGGTTGGTTTTGATCTTTGCGCTGATTGTTATAAAATTCGCAGCAAGATTCCTGGTCGGTTCAATCAGCAGCACACTCCAGATCACGAGTTTGAGCTTAACTCAGTGAACATGATCCATAGCATAATAACACTGGTAACTGGACGGTTAGGACATGGTTCCACTGAAAACTTGCTGATGGAAGGCCTAGGGTTTAGACCTGAAGATCCCAATTTGGTTGTTGATGCTGATGAAGAACATGCCCAGAATGACTCTGAAGGCACCAATTGA | 1266 | 0.4313 | MALQGTENAYEDPNLADDEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHQSMSPLCESHCPICRRPYYHFPTICWMLHFLLQKMYPAAYKRREIQTLEEEKKRGTFSPQIDGDNLASDVKFDHPGTSSPCYAGNLVSNPQNAGLSASMEQSGSETQKQNNGNICSKDVFGGTPEDFGTPAQVKMLPQTDRQEKISAADVVCSTCKQLLFHPVVLNCGHVYCESCIKNSTDEMLRCQICQLPHPRGFPKVCLELDHFIKEQFPEEYAKQRDAVQLRHINDKRSLNEGGGGKAAWWSDPHSKVHVGVGCDFCGMFPIVGDRYRCKDCKEKVGFDLCADCYKIRSKIPGRFNQQHTPDHEFELNSVNMIHSIITLVTGRLGHGSTENLLMEGLGFRPEDPNLVVDADEEHAQNDSEGTN | 421 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5777g00016 | 421 | Pfam | RING-type zinc-finger | 206 | 237 | IPR027370 | - | |
| Pral5777g00016 | 421 | PANTHER | UNCHARACTERIZED | 19 | 365 | - | - | |
| Pral5777g00016 | 421 | Gene3D | - | 300 | 366 | IPR043145 | - | |
| Pral5777g00016 | 421 | SUPERFAMILY | RING/U-box | 299 | 364 | - | - | |
| Pral5777g00016 | 421 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 125 | IPR013083 | - | |
| Pral5777g00016 | 421 | ProSiteProfiles | Zinc finger ZZ-type profile. | 307 | 371 | IPR000433 | GO:0008270 | |
| Pral5777g00016 | 421 | SMART | zz_5 | 306 | 352 | IPR000433 | GO:0008270 | |
| Pral5777g00016 | 421 | FunFam | E3 ubiquitin-protein ligase PRT1 | 193 | 288 | - | - | |
| Pral5777g00016 | 421 | Pfam | Zinc finger, ZZ type | 307 | 345 | IPR000433 | GO:0008270 | |
| Pral5777g00016 | 421 | FunFam | E3 ubiquitin-protein ligase PRT1 | 301 | 366 | - | - | |
| Pral5777g00016 | 421 | SUPERFAMILY | RING/U-box | 17 | 78 | - | - | |
| Pral5777g00016 | 421 | SUPERFAMILY | RING/U-box | 203 | 266 | - | - | |
| Pral5777g00016 | 421 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 289 | IPR013083 | - | |
| Pral5777g00016 | 421 | Pfam | Zinc finger, C3HC4 type (RING finger) | 28 | 72 | - | - | |
| Pral5777g00016 | 421 | SMART | ring_2 | 206 | 243 | IPR001841 | - | |
| Pral5777g00016 | 421 | SMART | ring_2 | 29 | 68 | IPR001841 | - | |
| Pral5777g00016 | 421 | FunFam | E3 ubiquitin-protein ligase PRT1 | 20 | 115 | - | - | |
| Pral5777g00016 | 421 | ProSiteProfiles | Zinc finger RING-type profile. | 206 | 244 | IPR001841 | - | |
| Pral5777g00016 | 421 | ProSitePatterns | Zinc finger RING-type signature. | 221 | 230 | IPR017907 | - | |
| Pral5777g00016 | 421 | ProSiteProfiles | Zinc finger RING-type profile. | 29 | 69 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5777g00016 | Pral-Chr5777 | 39628 | 46158 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5777g00016 | 14 | 69 | C3H Transcription Factor Family | AT1G74990 | 36.842 | 3.84e-07 | 47.4 |