Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5772g00010 ATGTCGAACAACACAAGCGGCGACAGTGGAAGCTTCTCGACAGAGAACGCCGGAGACGGTGTCGGAAAACGGCAGTCGGAGCTACTCGGTCAGTTTCACAGTCCAAATTCTCTTACTTCAACGACAACTAATAGCAATGGTTCCAACACACCTCCCCCTCCACCTCCTAAGAAGAAGAGAAACCTGCCAGGAAATCCAGATCCGAGCGCTGAGGTGATAGCTCTATCGCCAACCACCCTAATGGCCACAAACCGATTCATCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAAAACCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGAACCACCACGGAAGTTCGAAAGAGGGTCTACGTTTGTCCTGAAACATCGTGTGTACACCACAACCCAGCCCGAGCACTTGGTGACCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAATGCTCAAAGAAATACGCCGTTCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGAACCAAGGAATACAAATGTGACTGCGGCACTATCTTTTCGAGGAGAGATAGTTTCATCACCCATAGAGCTTTCTGTGACGCACTAGCTGAGGAGAATAACAAAGCCAGCGAAAGACAAGCAATGCAAGGAATGAGCCCGAGCTTTCGGCCGGCGGGGCATCAAATTCAGAACCTGGTTTCTTCATTACCAGTCAATAATACCAATAACATCCCGAACCCACAAGCCGGGAAGATTATGGACAACAACAATAACAATAAGCATCCAATGTCGTCACTGTTTCAGGAGCTCATGCCAATGCCTGCAAATAAACCATTAAACCATAATATGAATGCAGGAAACCTATTCACGAGAAGCCTCTCTTCTAGTTCCTCGACACCTCCTCTTCAACTCAATTCAAATTCACCCAACGTCGTCTTTGAAGAAAATGGGCACCACCAACTACCGCTACCGGCAGCAGCTGCTCCCTCGCATCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCCCAAATGGGTGCAACTGTGAGCAGCTCGTCGTCCATGGCGGAAAAGGGCTTCGTGACGAGCATGGCGCCTCCGTCATATGGTCCCAACGGGCTTTCCTTCATGAACCACTATATGCAGAATGGGCAAGAGGATCATATCTCCGGTCAGTATTTAAATGCGAACGGGAGCCTGGGAATGAACGGTGTGGATATGTTTAACGCTATCTTGGACCAAAGCAAAGCTTTCTCGAAGATCATAGAGGAAAATAACCGGAGCAATAATGGAGTTTTGCATGGTGGGGCAAGTGGTGGGGCTATTAACATGGATGCAACTAAGGGAAGTGGGGATGTGCTGACTCTGGACTTCATGGGAATAGGAGGAGGAGGAGGTTCACATGCAAGTTTCTACGGAAACCAACACCAACAGCGAGAGAAGGGTGCAATTACAGGAGATGAGATCTGGAGAAGTTGGTCCATGAAGAATGCCGGATTTGAGTCATTCTCAGCAACAAGCAGCATCAACTGA 1566 0.4885 MSNNTSGDSGSFSTENAGDGVGKRQSELLGQFHSPNSLTSTTTNSNGSNTPPPPPPKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVRKRVYVCPETSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKASERQAMQGMSPSFRPAGHQIQNLVSSLPVNNTNNIPNPQAGKIMDNNNNNKHPMSSLFQELMPMPANKPLNHNMNAGNLFTRSLSSSSSTPPLQLNSNSPNVVFEENGHHQLPLPAAAAPSHLMSATALLQKAAQMGATVSSSSSMAEKGFVTSMAPPSYGPNGLSFMNHYMQNGQEDHISGQYLNANGSLGMNGVDMFNAILDQSKAFSKIIEENNRSNNGVLHGGASGGAINMDATKGSGDVLTLDFMGIGGGGGSHASFYGNQHQQREKGAITGDEIWRSWSMKNAGFESFSATSSIN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5772g00010 521 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pral5772g00010 521 MobiDBLite consensus disorder prediction 1 20 - -
Pral5772g00010 521 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
Pral5772g00010 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Pral5772g00010 521 MobiDBLite consensus disorder prediction 29 47 - -
Pral5772g00010 521 SMART c2h2final6 86 108 IPR013087 -
Pral5772g00010 521 SMART c2h2final6 162 182 IPR013087 -
Pral5772g00010 521 SMART c2h2final6 127 157 IPR013087 -
Pral5772g00010 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 485 IPR031140 -
Pral5772g00010 521 MobiDBLite consensus disorder prediction 1 70 - -
Pral5772g00010 521 Gene3D Classic Zinc Finger 140 221 - -
Pral5772g00010 521 SUPERFAMILY beta-beta-alpha zinc fingers 157 206 IPR036236 -
Pral5772g00010 521 Gene3D Classic Zinc Finger 65 136 - -
Pral5772g00010 521 MobiDBLite consensus disorder prediction 48 62 - -
Pral5772g00010 521 FunFam protein indeterminate-domain 12-like 65 133 - -
Pral5772g00010 521 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5772g00010 Pral-Chr5772 45213 48538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5772g00010 40 376 IDZ Gene Family AT3G50700 54.545 2.23e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5772g00010 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5772g00010 - - gmx:100813556 623.239