Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5772g00009 ATGTCGAACAACACAAGCGGCGACAGTGGAAGCTTCTCGACAGAGAACGCCGGAGACGGTGTCGGAAAACGGCAGTCGGAGCTACTCGGTCAGTTTCACAGTCCAAATTCTCTTACTTCAACGACAACTAATAGCAATGGTTCCAACACACCTCCCCCTCCACCTCCTAAGAAGAAGAGAAACCTGCCAGGAAATCCAGATCCGAGCGCTGAGGTGATAGCTCTATCGCCAACCACCCTAATGGCCACAAACCGATTCATCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAAAACCTGCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGAACCACCACGGAAGTTCGAAAGAGGGTCTACGTTTGTCCTGAAACATCGTGTGTACACCACAACCCAGCCCGAGCACTTGGTGACCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTGACAAATGCTCAAAGAAATACGCCGTTCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGAACCAAGGAATACAAATGTGACTGCGGCACTATCTTTTCGAGGAGAGATAGTTTCATCACCCATAGAGCTTTCTGTGACGCACTAGCTGAGGAGAATAACAAAGCCAGCGAAAGACAAGCAATGCAAGGAATGAGCCCGAGCTTTCGGCCGGCGGGGCATCAAATTCAGAACCTGGTTTCTTCATTACCAGTCAATAATACCAATAACATCCCGAACCCACAAGCCGGGAAGATTATGGACAACAACAATAACAGAAACCTATTCACGAGAAGCCTCTCTTCTAGTTCCTCGACACCTCCTCTTCAACTCAATTCAAATTCACCCAACGTCGTCTTTGAAGAAAATGGGCACCACCAACTACCGCTACCGGCAGCAGCTGCTCCCTCGCATCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCCCAAATGGGTGCAACTGTGAGCAGCTCGTCGTCCATGGCGGAAAAGGGCTTCGTGACGAGCATGGCGCCTCCGTCATATGGTCCCAACGGGCTTTCCTTCATGAACCACTATATGCAGAATGGGCAAGAGGATCATATCTCCGGTCAGTATTTAAATGCGAACGGGAGCCTGGGAATGAACGGTGTGGATATGTTTAACGCTATCTTGGACCAAAGCAAAGCTTTCTCGAAGATCATAGAGGAAAATAACCGGAGCAATAATGGAGTTTTGCATGGTGGGGCAAGTGGTGGGGCTATTAACATGGATGCAACTAAGGGAAGTGGGGATGTGCTGACTCTGGACTTCATGGGAATAGGAGGAGGAGGAGGTTCACATGCAAGTTTCTACGGAAACCAACACCAACAGCGAGAGAAGGGTGCAATTACAGGAGATGAGATCTGGAGAAGTTGGTCCATGAAGAATGCCGGATTTGAGTCATTCTCAGCAACAAGCAGCATCAACTGA 1485 0.4936 MSNNTSGDSGSFSTENAGDGVGKRQSELLGQFHSPNSLTSTTTNSNGSNTPPPPPPKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVRKRVYVCPETSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKASERQAMQGMSPSFRPAGHQIQNLVSSLPVNNTNNIPNPQAGKIMDNNNNRNLFTRSLSSSSSTPPLQLNSNSPNVVFEENGHHQLPLPAAAAPSHLMSATALLQKAAQMGATVSSSSSMAEKGFVTSMAPPSYGPNGLSFMNHYMQNGQEDHISGQYLNANGSLGMNGVDMFNAILDQSKAFSKIIEENNRSNNGVLHGGASGGAINMDATKGSGDVLTLDFMGIGGGGGSHASFYGNQHQQREKGAITGDEIWRSWSMKNAGFESFSATSSIN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5772g00009 494 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pral5772g00009 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 458 IPR031140 -
Pral5772g00009 494 MobiDBLite consensus disorder prediction 1 20 - -
Pral5772g00009 494 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Pral5772g00009 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Pral5772g00009 494 MobiDBLite consensus disorder prediction 29 47 - -
Pral5772g00009 494 Gene3D Classic Zinc Finger 65 136 - -
Pral5772g00009 494 SMART c2h2final6 86 108 IPR013087 -
Pral5772g00009 494 SMART c2h2final6 162 182 IPR013087 -
Pral5772g00009 494 SMART c2h2final6 127 157 IPR013087 -
Pral5772g00009 494 FunFam protein indeterminate-domain 12-like 65 133 - -
Pral5772g00009 494 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Pral5772g00009 494 MobiDBLite consensus disorder prediction 1 70 - -
Pral5772g00009 494 Pfam Zinc-finger double-stranded RNA-binding 86 108 IPR022755 -
Pral5772g00009 494 MobiDBLite consensus disorder prediction 48 62 - -
Pral5772g00009 494 Gene3D Classic Zinc Finger 140 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5772g00009 Pral-Chr5772 45212 48538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5772g00009 40 349 IDZ Gene Family AT3G50700 53.736 1.97e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5772g00009 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5772g00009 - - gmx:100785295 581.252