Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5772g00006 ATGGAGGATGATCAGAGACTGTTGCCGATTGCGAATGTGGGAAGGATCATGAGGCAGATACTTCCTGGGAGTGCAAAGATCTCAAAAGAAGGGAAGCAGTTAATGCAAGAATGTGCGACTGAGTTCATAAGCTTTGTGACAGAGGAAGCTTCTGACAAGTGTCACAAAGAGAATCGCAAGACCGTCAATGGGGATGACATCTGTTGGGCCCTAAGTGCTTTAGGGTTTGATAATTATGCTGAGGCCATTGCCAGGTATTTACATAAATACAGGCAAGCTGAGAGGCACAGAATCGTCAACCAGAAAACCCAACCTCATCATCATAAAACTCAGCGTATGCTTGAAAAATCAGCAAGCTCCGCCCAAAGGGACAAGCACCCATCTGAAATCTGTGATGCATCAGAGAATAGGGTTTCTGAAGAGAAGGCTCCTGCAACAAATCAATCTCGATGA 453 0.4525 MEDDQRLLPIANVGRIMRQILPGSAKISKEGKQLMQECATEFISFVTEEASDKCHKENRKTVNGDDICWALSALGFDNYAEAIARYLHKYRQAERHRIVNQKTQPHHHKTQRMLEKSASSAQRDKHPSEICDASENRVSEEKAPATNQSR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5772g00006 150 Gene3D Histone, subunit A 1 142 IPR009072 GO:0046982
Pral5772g00006 150 SUPERFAMILY Histone-fold 4 100 IPR009072 GO:0046982
Pral5772g00006 150 MobiDBLite consensus disorder prediction 96 150 - -
Pral5772g00006 150 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral5772g00006 150 MobiDBLite consensus disorder prediction 108 139 - -
Pral5772g00006 150 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7 71 IPR003958 -
Pral5772g00006 150 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Pral5772g00006 150 PRINTS CCAAT-binding transcription factor subunit A signature 35 53 - -
Pral5772g00006 150 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5772g00006 Pral-Chr5772 23516 24402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5772g00006 1 123 CCAAT-HAP3 Transcription Factor Family AT1G09030 60.432 1.30e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral5772g00006 CBFD_NFYB_HMF 3.8e-25 CL0012