Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5772g00001 TTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCGGTTTGATGCCATCAACGTTGTAGCTCTTTTTTCAAATGATAATGACACTATTGTAGATATTATTGTCCTTTTGCATTGTAAACTAGAACCTTGTCAGAGAAATTTTGGGGGCCTATCAGGCTGCAAGGTGTTGGTCTTCACAGATGAAAAGTACTTGCTAAAAAAATTTATTAAGATTGTGTCTTCATATGATCCAGATATTCTGATGGGTTGGGATATTCAAGGCGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTCGCATCTTGGTTTAGGATTACTTAATAGTTTATCTCGCACTCCATCTGACTCTCGGACTACTTCTGATGGTACTGAAACGTCTGAAAAAGATATGTCAGAAACTGCCATTCCGGGTACATCTAGTGCAGATGATGTACAAGAAAGTTCAATAATTGAAGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTTGGTGGCAGAATCGTGCTTAATGTGTGGCGACTTATCCGTGGAGAAGTTAAGCTCAATTTATACTCAGTTGATGCTGTGGCTGAAGCTGTATTGAGGAGGAAAGTTCCTTCAATTCACAACAAGGTTCTGACCAAATGGTTTTCTGGTGGTCCTGGACGAGCAAGATATCAGTGTGTCAAATATGTTACTAAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGTATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATATCGTGTTGAATCAATGTTTCTGAGGTTGGCACATACGCATAACTATCTTGCCATCTCTCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCCTTGTGATGGAACCAGACTCAGGATTTTATTCAGACCCGGTTGTTGTATTTGACTTTCAATCATTATATCCATCCATGATAATTGCGTACAATCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGCCATCAAAAGCAAACACGCTTGGGGTTAGTTCATTTTCACCCAGGCAGCATGTTCTGCAGGATTTAAAAGATCAGATCTTGCTTACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTACCACGCTTGTTGGAAGAAATTCTATCAACTAGGATAATGGTGAAACAAGCAATGAAAATTTTGGCTCCTTCACAGCAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTGACTTATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGCGCAGAGCTTGCAGACAGTATAGTTCAATGCGGCCGTTGCACATTGGAAAGGGCCATATCATTTGTAAATCAACACGATAAGTGGAATGCAAAAGTCATTTATGGAGATACTGATAGCATGTTTGTTCTCCTCAAAGGACGCAATATTAAAGAATGTTTCCAAATTGGGAGTGAGATTGCTTCTGCTGTCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGTTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAAAAGCGGTATGTTGGTTACAGTTATGAAAGCCCTGATCAAGTTGAGCCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGTAGAGACACATGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGGCTTTTCTTCGAAAATCAAGATTCATCGGAGGTGAAAAGTTATTTACAACGTCAGTGGAGGAGAATTCTTTCAGGCAAAGTCCCGCTTAAAGATTTTGTCTTTGCTAAGGAGGTTCGCCTAGGTAGCTATAGCGCAAGGACATCATCGTCTTTACCTCCAGCTGCAATTGTCGCCACCAAGGCAATGAGGTTTGACCCTAGGGCTGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGACATGGTTGTGGATCCGTTGGAAGTTTTGCGACTCGATTCCCCACTAAGAATAAATGACTTGTATTACATAAATAAACAAGTAATACCTGCTTTGCAGCGGGTGCTTGGGCTTGTTGGTGCTGACCTTAACCAATGGTTCTTAGAGATGCCCCGTCCTTTAAAGGAAGCCCGTGTAAAGCATCTCATAGCTCCGAATTCACATCGAACAAGAATAGACTCCTATTATCTGTCAAAGCATTGCATACTGTGTGGCGGGTTGGTCCAAGGATCTGCACATATATGCATTCAGTGTTCTGAAAATGGAGTGGCTGCTGCAACGGCTGTGATTAGTAAAACATCAAAGTTGGAACGAGAGATGCAGCATCTTGTTGCTATATGCGACCATTGTGAGGGTGGAGGCAGGCTTCTGGAAAGTGATGTGAAGTGCACGTCAATTTCATGCTCGGTGTTTTATGAGAGACGAAAAGTTCAGAAAGAACTACTAGCGATGAACCATGTTGCTGCTGGTGAAGGCTTCTATCCCAAATGCATGGTCGAGTGGTTCTGA 2559 0.422 FLAESRGELLPDPRFDAINVVALFSNDNDTIVDIIVLLHCKLEPCQRNFGGLSGCKVLVFTDEKYLLKKFIKIVSSYDPDILMGWDIQGGSLGFLAERASHLGLGLLNSLSRTPSDSRTTSDGTETSEKDMSETAIPGTSSADDVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVDAVAEAVLRRKVPSIHNKVLTKWFSGGPGRARYQCVKYVTKRAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTHNYLAISPGNQQVASQPAMECLPLVMEPDSGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVPSKANTLGVSSFSPRQHVLQDLKDQILLTPNGVMFVPSKVRRGILPRLLEEILSTRIMVKQAMKILAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLERAISFVNQHDKWNAKVIYGDTDSMFVLLKGRNIKECFQIGSEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQVEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFENQDSSEVKSYLQRQWRRILSGKVPLKDFVFAKEVRLGSYSARTSSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLEVLRLDSPLRINDLYYINKQVIPALQRVLGLVGADLNQWFLEMPRPLKEARVKHLIAPNSHRTRIDSYYLSKHCILCGGLVQGSAHICIQCSENGVAAATAVISKTSKLEREMQHLVAICDHCEGGGRLLESDVKCTSISCSVFYERRKVQKELLAMNHVAAGEGFYPKCMVEWF 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5772g00001 852 Pfam C4-type zinc-finger of DNA polymerase delta 751 824 IPR025687 -
Pral5772g00001 852 SMART polmehr3 11 496 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5772g00001 852 Gene3D Palm domain of DNA polymerase 303 548 IPR023211 -
Pral5772g00001 852 PRINTS DNA-directed DNA-polymerase family B signature 317 330 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5772g00001 852 PRINTS DNA-directed DNA-polymerase family B signature 482 490 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5772g00001 852 PRINTS DNA-directed DNA-polymerase family B signature 426 438 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5772g00001 852 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 2 844 IPR030559 GO:0006281|GO:0016035|GO:0019985
Pral5772g00001 852 Pfam DNA polymerase family B, exonuclease domain 10 143 IPR006133 -
Pral5772g00001 852 SUPERFAMILY DNA/RNA polymerases 304 717 IPR043502 -
Pral5772g00001 852 Gene3D - 559 724 IPR042087 -
Pral5772g00001 852 SUPERFAMILY Ribonuclease H-like 5 280 IPR012337 -
Pral5772g00001 852 FunFam DNA polymerase zeta 384 443 - -
Pral5772g00001 852 ProSitePatterns DNA polymerase family B signature. 484 492 IPR017964 GO:0000166|GO:0003676
Pral5772g00001 852 CDD DNA_polB_zeta_exo 3 239 - -
Pral5772g00001 852 MobiDBLite consensus disorder prediction 112 141 - -
Pral5772g00001 852 Pfam DNA polymerase family B 258 706 IPR006134 GO:0000166|GO:0003677
Pral5772g00001 852 FunFam DNA polymerase 559 728 - -
Pral5772g00001 852 Gene3D - 22 300 IPR036397 GO:0003676
Pral5772g00001 852 Gene3D Helix hairpin bin 383 443 - -
Pral5772g00001 852 CDD POLBc_zeta 265 714 - -
Pral5772g00001 852 FunFam DNA polymerase 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5772g00001 Pral-Chr5772 90 7324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5772g00001 12 831 Core DNA Replication Machinery Family AT5G63960 28.166 2.43e-91 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5772g00001 K02350 - gmx:100777934 1404.04