Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5771g00006 ATGGCAGACTCGCAGAGTGATTGGAAAATGTTCAGTATTCGGATTGTGTCCCTCGACTACTACATGGCACCGCCAATTCCAGGCCTGGATATCTGTTACAGCAGTTTCCATGGTGGGAAAGTGAATGAGGTTCCTGTTGTAAGAATATATGGTTCTACTCCAGCTGGGCAGAAAACTTGTTTGCATATACATCGGGCTTTGCCCTACATGTATGTGCCATGTGCTGATATACCTCCTCAGTCAGATCAAGACGCAGATGTGTACACGTATAAGGTATCTGCATCTCTTGAGAAAGCATTGAAGCTAAAAGGCAGCAGTGGTTTGACGAGGCAACATGTACATGGCTGCAGCCTTGTAAGAGCAAGGAGATTCTATGGTTATCATTCATCAGAGGAGTTATTTGTGAAGATATACCTATATTATCCACAAGATGTCTCCCGTGCTGCTAATCTACTATTGGCTGGTGCTGTTCTCGGGAAAAGCTTACAGCCCTATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGACTATAACTTGTATGGCATGGGTCATCTGCACTTGTTAAAGATGAAGTTCCGCCATCCTATGCCAGATTCTTCTGAGAAGAAATTGATTTTCAATAGTCAACAGACAGGGGGTCAGCAGTGTGGACATCATCTATGGTCTCATCTGATTGGATGTGGCAACTTCCCACTGAAGTGGATGCTTCATCAAATCACGAGGTTCATTGTCCTAAACGTCAAAGCACATGTGAACTGGAGGGGGATGCTTCTGTGGATGAGATTCTTTAATCAGCAGTTTAAAATGTATTTCCTTTCACAAACCCGATCAGATGTGCAAATGGTTCAGTCTCTTGCACCAATCTGGAAGGAGCAGCAGGAAAGGACTGGGATTTATGAGGATACTGTACTCCTGTTATCCTGGGAAGCATTGCCAGCCAGAAGAAGCACTGGATCTCCTGAAGTGGCTCGCAACTTGTCAAGCGGCAAAGTTGATGGTTCTGCTGATGATGAATCTTCAAGTCCAAGTGGTGGTTCAGCTGGAATTTCATTTGCAATGGACGAAAAAGGTGAATCCAATTGTTCTTCCAAATACTGTATACTGCAAAATACCAGAGCAGATACTTATAGCAAAGATAACAGTAATAAGGTATGGGGATCTTTGCCATTTTCAATGACCTGCAACAATTTTGAACGTGCTAGCTTACATGTTGACTTGGTTTATTTGGCTAGAAATGAGAAAGATAATGGCGTGAAGAATGGGAATAAAGGTGCTTCAGACTTAAAAGAAGTAGATACACTGGATAATTGCTCTGTGCGGGACTTGATGAGGAGAAAGAGATGTTATCGAGTTGAGCAAACTGACCGTGAATCTGAAATAACTAAAAAACTACTTTTTGATGGGGATGAGAAGCTGACGACTGATGAAGGAGAAACAGAAGTCCAGAAGAGCTGTGTTTTGAAAATGAGCAAACATGATGTAGTGTCTAGGAAATCACCCCTTGTAATTGGCAGTTATGGTGGACCAACTCTCTCTGAGCTGAACAAGTTTCACTCTACTAGTTCTTCTGATTACTCCGGGGTTTCCAGTGGTAGAATGTTTAGGATTGACGGAAGCAAATCTTATGAGCAACATGGTCAGATGAAGTCATGTGAGAACGCTGTGGGTGTGAATACTGCAACTGACATTCAAGTACTGCAATGTGTAAAAAGTGATGAGAAAAAACCCAGAGAGAATTTGGGTTTGTGTGAGACTATTGGCATAGAACCCTTTGTCAATGACATGATGGGTAATCACATGGGATTAACTCCTGCCATGGCAGTGAAAGCTCTGGATGATGTTATTCCTGCTTCTGCCAGTGGTTCCCCTAATGAGATGGAAACTTGCAACAAGCATGTTGCCAATAGTACCCCTGATCCTAAAGGGAAGAAGGTCTTGGGTGTTGCAACTTACTATCAAAATGATGGCTCTTATCTGTGCTTATTGAAACCCAAAATTTTGCCTCCTTCTGAGGATAGTGTTCAGAGATGGCTACTTTGTGATGAGAGAGATCAAATGTTCCAAGAAACCGATGAAAAGGAGAAGCATTTGCCTAATTGGAATAGCAGACCTTGTCTTATGTCTAAACATGTCGAAGATGTTGATTCTGAAAAGAAGACTCCATCCATCAGTGGTGGACAAATGAATCTAATTAAAACATGCTTGGATGGCTCACAAGACGGTTCTCAGATTTCAGGCCCTGATGTGAAATCAAAGTCTACTCCCCTAAGTCAAATTGGGTTTCGTGATCCTGCAAGTATTGGCTGTGGCCAGCAATTGACGTTACTCAGTATAGAGGTTCTTGCAGAATCAAGAGGAGAACTTTTACCTGATCCCCGGTTTGATGCCATCAACGTTGTAGCTCTTGGTTTTCAAAATGATAATGACACTATTGTAGATATTATTGTCCTTTTGCATTGTAAACTAGAACCTTGTCAGAGAAATTTTGGGGGCCTATCAGGCTGCAAGGTGTTGGTCTTCACAGATGAAAAGTACTTGCTAAAAAAATTTATTAAGATTGTGTCTTCATATGATCCAGATATTCTGATGGGTTGGGATATTCAAGGCGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTCGCATCTTGGTTTAGGATTACTTAATAGTTTATCTCGCACTCCATCTGACTCTCGGACTACTTCTGATGGTACTGAAACGTCTGAAAAAGATATGTCAGAAACTGCCATTCCGGGTACATCTAGTGCAGATGATGTACAAGAAAGTTCAATAATTGAAGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTTGGTGGCAGAATCGTGCTTAATGTGTGGCGACTTATCCGTGGAGAAGTTAAGCTCAATTTATACTCAGTTGATGCTGTGGCTGAAGCTGTATTGAGGAGGAAAGTTCCTTCAATTCACAACAAGGTTCTGACCAAATGGTTTTCTGGTGGTCCTGGACGAGCAAGATATCAGTGTGTCAAATATGTTACTAAGAGAGCAAAGCTGAATCTTGAGATATTAAGCCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGTATTTTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATATCGTGTTGAATCAATGTTTCTGAGGTTGGCACATACGCATAACTATCTTGCCATCTCTCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCCCTTGTGATGGAACCAGACTCAGGATTTTATTCAGACCCGGTTGTTGTATTTGACTTTCAATCATTATATCCATCCATGATAATTGCGTACAATCTTTGCTTTTGTACGTGCCTTGGCAAAGTTGTGCCATCAAAAGCAAACACGCTTGGGGTTAGTTCATTTTCACCCAGGCAGCATGTTCTGCAGGATTTAAAAGATCAGATCTTGCTTACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTACCACGCTTGTTGGAAGAAATTCTATCAACTAGGATAATGGTGAAACAAGCAATGAAAAATTTGGCTCCTTCACAGCAAGTCCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTGACTTATGGCTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGCGCAGAGCTTGCAGACAGTATAGTTCAATGCGGCCGTTGCACATTGGAAAGGGCCATATCATTTGTAAATCAACACGATAAGTGGAATGCAAAAGTCATTTATGGAGATACTGATAGCATGTTTGTTCTCCTCAAAGGACGCAATATTAAAGAATGTTTCCAAATTGGGAGTGAGATTGCTTCTGCTGTCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGTTGGAGAAAGTTTATCAGCCTTGTTTCCTCCTTACTAAAAAGCGGTATGTTGGTTACAGTTATGAAAGCCCTGATCAAGTTGAGCCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGTAGAGACACATGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGGCTTTTCTTCGAAAATCAAGATTCATCGGAGGTGAAAAGTTATTTACAACGTCAGTGGAGGAGAATTCTTTCAGGCAAAGTCCCGCTTAAAGATTTTGTCTTTGCTAAGGAGGTTCGCCTAGGTAGCTATAGCGCAAGGACATCATCGTCTTTACCTCCAGCTGCAATTGTCGCCACCAAGGCAATGAGGTTTGACCCTAGGGCTGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGACATGGTTGTGGATCCGTTGGAAGTTTTGCGACTCGATTCCCCACTAAGAATAAATGACTTGTATTACATAAATAAACAAGTAATACCTGCTTTGCAGCGGGTGCTTGGGCTTGTTGGTGCTGACCTTAACCAATGGTTCTTAGAGATGCCCCGTCCTTTAAAGGAAGCCCGTGTAAAGCATCTCATAGCTCCGAATTCACATCGAACAAGAATAGACTCCTATTATCTGTCAAAGCATTGCATACTGTGTGGCGGGTTGGTCCAAGGATCTGCACATATATGCATTCAGTGTTCTGAAAATGGAGTGGCTGCTGCAACGGCTGTGATTAGTAAAACATCAAAGTTGGAACGAGAGATGCAGCATCTTGTTGCTATATGCGACCATTGTGAGGGTGGAGGCAGGCTTCTGGAAAGTGATGTGAAGTGCACGTCAATTTCATGCTCGGTGTTTTATGAGAGACGAAAAGTTCAGAAAGAACTACTAGCGATGAACCATGTTGCTGCTGGTGAAGGCTTCTATCCCAAATGCATGGTCGAGTGGTTCTGA 4905 0.4234 MADSQSDWKMFSIRIVSLDYYMAPPIPGLDICYSSFHGGKVNEVPVVRIYGSTPAGQKTCLHIHRALPYMYVPCADIPPQSDQDADVYTYKVSASLEKALKLKGSSGLTRQHVHGCSLVRARRFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVLGKSLQPYESHIPFILQFLVDYNLYGMGHLHLLKMKFRHPMPDSSEKKLIFNSQQTGGQQCGHHLWSHLIGCGNFPLKWMLHQITRFIVLNVKAHVNWRGMLLWMRFFNQQFKMYSXLSQTRSDVQMVQSLAPIWKEQQERTGIYEDTVLLLSWEALPARRSTGSPEVARNLSSGKVDGSADDESSSPSGGSAGISFAMDEKGESNCSSKYCILQNTRADTYSKDNSNKVWGSLPFSMTCNNFERASLHVDLVYLARNEKDNGVKNGNKGASDLKEVDTLDNCSVRDLMRRKRCYRVEQTDRESEITKKLLFDGDEKLTTDEGETEVQKSCVLKMSKHDVVSRKSPLVIGSYGGPTLSELNKFHSTSSSDYSGVSSGRMFRIDGSKSYEQHGQMKSCENAVGVNTATDIQVLQCVKSDEKKPRENLGLCETIGIEPFVNDMMGNHMGLTPAMAVKALDDVIPASASGSPNEMETCNKHVANSTPDPKGKKVLGVATYYQNDGSYLCLLKPKILPPSEDSVQRWLLCDERDQMFQETDEKEKHLPNWNSRPCLMSKHVEDVDSEKKTPSISGGQMNLIKTCLDGSQDGSQISGPDVKSKSTPLSQIGFRDPASIGCGQQLTLLSIEVLAESRGELLPDPRFDAINVVALGFQNDNDTIVDIIVLLHCKLEPCQRNFGGLSGCKVLVFTDEKYLLKKFIKIVSSYDPDILMGWDIQGGSLGFLAERASHLGLGLLNSLSRTPSDSRTTSDGTETSEKDMSETAIPGTSSADDVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVDAVAEAVLRRKVPSIHNKVLTKWFSGGPGRARYQCVKYVTKRAKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTHNYLAISPGNQQVASQPAMECLPLVMEPDSGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVPSKANTLGVSSFSPRQHVLQDLKDQILLTPNGVMFVPSKVRRGILPRLLEEILSTRIMVKQAMKNLAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLERAISFVNQHDKWNAKVIYGDTDSMFVLLKGRNIKECFQIGSEIASAVTAMNPSPVTLKLEKVYQPCFLLTKKRYVGYSYESPDQVEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFENQDSSEVKSYLQRQWRRILSGKVPLKDFVFAKEVRLGSYSARTSSSLPPAAIVATKAMRFDPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLEVLRLDSPLRINDLYYINKQVIPALQRVLGLVGADLNQWFLEMPRPLKEARVKHLIAPNSHRTRIDSYYLSKHCILCGGLVQGSAHICIQCSENGVAAATAVISKTSKLEREMQHLVAICDHCEGGGRLLESDVKCTSISCSVFYERRKVQKELLAMNHVAAGEGFYPKCMVEWF 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5771g00006 1635 FunFam DNA polymerase 1342 1511 - -
Pral5771g00006 1635 Gene3D Helix hairpin bin 1166 1226 - -
Pral5771g00006 1635 Gene3D Palm domain of DNA polymerase 1086 1331 IPR023211 -
Pral5771g00006 1635 FunFam DNA polymerase 783 1083 - -
Pral5771g00006 1635 ProSitePatterns DNA polymerase family B signature. 1267 1275 IPR017964 GO:0000166|GO:0003676
Pral5771g00006 1635 MobiDBLite consensus disorder prediction 322 354 - -
Pral5771g00006 1635 Gene3D - 1342 1506 IPR042087 -
Pral5771g00006 1635 SUPERFAMILY Ribonuclease H-like 36 1047 IPR012337 -
Pral5771g00006 1635 Pfam C4-type zinc-finger of DNA polymerase delta 1534 1607 IPR025687 -
Pral5771g00006 1635 CDD DNA_polB_zeta_exo 773 1022 - -
Pral5771g00006 1635 Gene3D DNA Polymerase, chain B, domain 1 29 197 - -
Pral5771g00006 1635 CDD POLBc_zeta 1048 1497 - -
Pral5771g00006 1635 MobiDBLite consensus disorder prediction 335 350 - -
Pral5771g00006 1635 FunFam DNA polymerase zeta 1167 1226 - -
Pral5771g00006 1635 FunFam DNA polymerase 30 196 - -
Pral5771g00006 1635 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 303 IPR030559 GO:0006281|GO:0016035|GO:0019985
Pral5771g00006 1635 SMART polmehr3 774 1279 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5771g00006 1635 PRINTS DNA-directed DNA-polymerase family B signature 1100 1113 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5771g00006 1635 PRINTS DNA-directed DNA-polymerase family B signature 1209 1221 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5771g00006 1635 PRINTS DNA-directed DNA-polymerase family B signature 1265 1273 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral5771g00006 1635 MobiDBLite consensus disorder prediction 896 923 - -
Pral5771g00006 1635 SUPERFAMILY DNA/RNA polymerases 1087 1500 IPR043502 -
Pral5771g00006 1635 Pfam DNA polymerase family B, exonuclease domain 55 195 IPR006133 -
Pral5771g00006 1635 Pfam DNA polymerase family B, exonuclease domain 775 926 IPR006133 -
Pral5771g00006 1635 Pfam DNA polymerase family B 1041 1489 IPR006134 GO:0000166|GO:0003677
Pral5771g00006 1635 Gene3D - 807 1083 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5771g00006 Pral-Chr5771 46584 61777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5771g00006 39 195 Core DNA Replication Machinery Family AT5G63960 27.160 1.04e-10 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5771g00006 K02350 - gmx:100777934 1616.28