Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5770g00045 ATGGATCACCAAGGAGGGTATAGCGCAAACCCATCTATGGGGGTTATTGGTAGTGGGGCTCAGTTGCCTTATGGTTCTAATCCTTACCAGCCAAGCCAAATATCTGGGGCACCTGGTTCTGTCGTTACCTCAGTTGGGACTATTCAAACTACTGGTCAGCCTGCGGGAGCTCAGCTGGGACAACAACTTGCTTATCAGCATATTCATCAGCAGCAGCAGCAGCAACTTCAGCAACAACTCCAAAGCTTTTGGGCAACTCAATACCAAGAAATTGAGAGGGTAACTGACTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAAGCCGATGAGGATGTTAGGATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTGACCTTGCGTTCTTGGAACCACACTGAGGAAAACAAAAGGAGAACACTGCAAAAGAATGATATCGCAGCCGCAATCACAAGGACTGACATCTTTGATTTTTTAGTTGATATTGTGCCGCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACCATGCCAGTTGCAGGGCCTGCTGATGCTCTTCCTTATGGCTATATGCCACCACAGCATGCTCCTCAAGTTGGCACTGCTGGGGTCATCATGGGTAGGCCTGTAATGGACCCAAGCATGTATGCTCAACAATCGAATCCCTACATGTCACAACAAATGTGGCCACAGCCGCAAGAGCAGCAACCATCATCTCCAGATCATTAG 783 0.4725 MDHQGGYSANPSMGVIGSGAQLPYGSNPYQPSQISGAPGSVVTSVGTIQTTGQPAGAQLGQQLAYQHIHQQQQQQLQQQLQSFWATQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYGYMPPQHAPQVGTAGVIMGRPVMDPSMYAQQSNPYMSQQMWPQPQEQQPSSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5770g00045 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Pral5770g00045 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 230 - -
Pral5770g00045 260 Pfam Core histone H2A/H2B/H3/H4 64 164 IPR007125 GO:0003677
Pral5770g00045 260 SUPERFAMILY Histone-fold 60 173 IPR009072 GO:0046982
Pral5770g00045 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5770g00045 Pral-Chr5770 189743 192641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5770g00045 17 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.793 2.08e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pral5770g00045 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5770g00045 K08066 - gmx:100527803 386.726