Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5770g00033 | ATGATCAAGCCCGTCTCTCCCAGTGGACCCCTTCTCTGCTTCTGCCTCCTCTTACCGCTCCTCGTTGCTGCTCAGCCCCCCTCCAATTCTAATAATAATGACCAAACCCAACAGCTCAATAACCTCACCCCTTCCATGGCCATCATCATCGTCATCTTGATCGCCGCTCTTTTTCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCTGATTCTCCCTCCGGCAGCGTTCGTCCCCTCGGTCTCCGTGCTTCCATCGGTCGTTCCAGGCGTGCTCCTCGCGGTCTCGACCCTCTCGTCATCCAGACCTTTCCCACTCTCCAGTATTCTCATGTTAAGATTCACAAGATCGGCAAAGGCGCCCTCGAATGCGCCGTCTGCTTGTCCGAGTTCGAGGACACCGAAACCCTGCGTTTGATCCCCAAGTGCGATCATGTCTTCCACCCTGAGTGCATCGATGAGTGGTTGGCTTCTCATACCACCTGCCCCGTCTGTCGCGCCGACCTTGTTCCTCAGCCTGACCAGTCACTCCGCGGAGTTCAGAACGTCAATCCGGACGCCGCGGACCTTGAAGCTCAGAACGAGGACGTGGAACCCGAACCCGAACACGGGCAACAACGTACTGCGGATCCTGATCCAGAACCAGTGGAGCCCGAAATTCTGTGCCTCAATCAGTCGATGAAACGGAACCGCACGCGAGGGTCTCGATCGGGTAGGGCGCGGAGGTTTCCCCGGTCGCACTCGACCGGGCATTCTTTGGTCCAGCCTGGTGAAGACACGGAACGTTTCACTCTGAGATTGCCCGTGGAAGTGAGGAATCAGATATTGAACCGGGAATTGCATCGAGCGACAAGCATGGTTGTCTTGCCCAGAGAAGGTAGTTCCAGACGGGGCTATCGAATTAGTGGTGATGGCAGCAGCAGAGGGAGGTTTTCGAGGCGGCTGAACCGCAGTGTTAAATCGGACCGATGGGTTTTCACGATGGCGCCGCCGTTTCTTGTAAGGGCGTCGTCTATCAGATCGCCGAAAGTGGGAGGGAGCGCCGGTGAAGGAACCTCCGCTCAATTCGTCCTTCCGGCGGCGACCGATGCGGCCCGGCCCCCGGTTTAA | 1113 | 0.5741 | MIKPVSPSGPLLCFCLLLPLLVAAQPPSNSNNNDQTQQLNNLTPSMAIIIVILIAALFLMGFFSIYIRHCADSPSGSVRPLGLRASIGRSRRAPRGLDPLVIQTFPTLQYSHVKIHKIGKGALECAVCLSEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRADLVPQPDQSLRGVQNVNPDAADLEAQNEDVEPEPEHGQQRTADPDPEPVEPEILCLNQSMKRNRTRGSRSGRARRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRNQILNRELHRATSMVVLPREGSSRRGYRISGDGSSRGRFSRRLNRSVKSDRWVFTMAPPFLVRASSIRSPKVGGSAGEGTSAQFVLPAATDAARPPV | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5770g00033 | 370 | CDD | RING-H2_EL5-like | 124 | 167 | - | - | |
| Pral5770g00033 | 370 | FunFam | E3 ubiquitin-protein ligase ATL6 | 85 | 173 | - | - | |
| Pral5770g00033 | 370 | MobiDBLite | consensus disorder prediction | 342 | 370 | - | - | |
| Pral5770g00033 | 370 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 172 | IPR013083 | - | |
| Pral5770g00033 | 370 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 167 | IPR001841 | - | |
| Pral5770g00033 | 370 | SUPERFAMILY | RING/U-box | 119 | 174 | - | - | |
| Pral5770g00033 | 370 | Pfam | Ring finger domain | 124 | 167 | IPR001841 | - | |
| Pral5770g00033 | 370 | MobiDBLite | consensus disorder prediction | 198 | 215 | - | - | |
| Pral5770g00033 | 370 | PANTHER | RING FINGER DOMAIN-CONTAINING | 27 | 177 | - | - | |
| Pral5770g00033 | 370 | MobiDBLite | consensus disorder prediction | 193 | 260 | - | - | |
| Pral5770g00033 | 370 | MobiDBLite | consensus disorder prediction | 233 | 247 | - | - | |
| Pral5770g00033 | 370 | SMART | ring_2 | 125 | 166 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5770g00033 | Pral-Chr5770 | 163631 | 165172 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5770g00033 | 12 | 355 | Rapid Response to Elicitors | AT3G05200 | 46.552 | 6.62e-90 | 274 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5770g00033 | K10664 | - | gmx:100810865 | 407.142 |