Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5770g00027 ATGGATTCCGTCAACCAAACAAAGGTAGTCCCAGCGGATGACGCTCCTTTAGTCAAACATAAAAAACGAAGCTCTCTGTTTCGTTCCTCCACTTCTGCCCAAGACTTGAGACATTTTGAACTGGAGAAAGAGAAAGAAGATGTTTCATCTCCTAGAGGAGTGTTAGAAGCCTGCATTCGTGATTTTGATTCTTGTCTACAATCATCCGAAATGGAGAACGGTTGTTCAAGGTCCAAGGCACAAATTAGTTGGAGCAAATATTTCAAAAATTTGAAAAAGAGATCAATGAAGCGTCTAGCTTCCTTCCCTCCTCTTGGTGTGCCAACGATACCAAAAGGGAAAAGCAAAAGCAGTGGAGAAAATCCTGTTTTGACTAATGTATACAACTTCAGATCTTCGTTGGTGAATTTCACACTCTCTGAATTGAGAAATTCAACCAACAATTTTAGTAATGAAAATTTGATTGGAAGTGGTGGCTATTCTGAAGTTTACTGGGGTCGTCTCCAAGACGGGAGTCTAGTAGCTATCAAGAGTCTGACTAAAGGGACTCCAGACGAGAGGACGGCAAGCTTTCTATCCGAACTAGGCATTATTGCTCATGTTGACCACCCCAATATTGCAAAGCTTATTGGATGTGATGTAGGAGGAATGCACCTTGTGTTCCAACTTTCTCGTCTGGGAAGCTTAGGATCTCTCCTTCATGGTCCAAGTAAAAACAAGTTAGATTGGAGTAAAAGATATAAGATTGCTCTGGGCGTAGCCAATGGCCTCCTGTACCTTCACGAGAGTTGTCACAGGCGAATCATTCATAGAGATATTAAGTCAGATAATATCCTGCTCACTGAAAGCTTCGAGCCACAGATTTGTGATTTTGGGCTGGCAAAATGGTTACCCAGACAATGCACCCACCATAATGTATCGAAATTTGAAGGCACATTTGGGTACCTTGCTCCTGAATATTTCATGCATGGTATGGTGGACGAGAAAACTGATGTTTATTCTTTTGGGGTTATACTGTTGGAGCTTATAACTGGGCGTCCAGCTGTGGATCAAAATCAGCTTAGTGTTGTATTATGGGCAAAGCCTTTGGTTGAGGATAATAATATTAAGGACCTTGTTGATCCTTGTCTTCACAACAACTTTGACCGTGAGCAGATGGATCGGGTCATTTTGACCGCATCTTTGTGTATCGAGCACTCTCCTGTCTTACGTCCCTGCATGAGTCAGCAGGCTGCAATACTGCTAAGGGATGATGACTTTGTGAGGCAACCTACAAATGCAAGCCGGAGGCGGTCTTTCCTTAGAACATACTCACAAGAGCTTCTGGATGCACAAGAGTACAACTCAACCAAGTATCTAAATGATCTCAATCAACACAAGAAGATTGCCCTGGGATCTTGA 1401 0.4261 MDSVNQTKVVPADDAPLVKHKKRSSLFRSSTSAQDLRHFELEKEKEDVSSPRGVLEACIRDFDSCLQSSEMENGCSRSKAQISWSKYFKNLKKRSMKRLASFPPLGVPTIPKGKSKSSGENPVLTNVYNFRSSLVNFTLSELRNSTNNFSNENLIGSGGYSEVYWGRLQDGSLVAIKSLTKGTPDERTASFLSELGIIAHVDHPNIAKLIGCDVGGMHLVFQLSRLGSLGSLLHGPSKNKLDWSKRYKIALGVANGLLYLHESCHRRIIHRDIKSDNILLTESFEPQICDFGLAKWLPRQCTHHNVSKFEGTFGYLAPEYFMHGMVDEKTDVYSFGVILLELITGRPAVDQNQLSVVLWAKPLVEDNNIKDLVDPCLHNNFDREQMDRVILTASLCIEHSPVLRPCMSQQAAILLRDDDFVRQPTNASRRRSFLRTYSQELLDAQEYNSTKYLNDLNQHKKIALGS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5770g00027 466 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 225 428 - -
Pral5770g00027 466 SMART serkin_6 149 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5770g00027 466 SUPERFAMILY Protein kinase-like (PK-like) 129 410 IPR011009 -
Pral5770g00027 466 Gene3D Transferase(Phosphotransferase) domain 1 225 429 - -
Pral5770g00027 466 ProSiteProfiles Protein kinase domain profile. 149 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5770g00027 466 Gene3D Phosphorylase Kinase; domain 1 112 221 - -
Pral5770g00027 466 ProSitePatterns Protein kinases ATP-binding region signature. 155 177 IPR017441 GO:0005524
Pral5770g00027 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Pral5770g00027 466 PANTHER OS08G0249100 PROTEIN 33 459 IPR046958 -
Pral5770g00027 466 Pfam Protein kinase domain 150 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5770g00027 Pral-Chr5770 125779 128657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5770g00027 132 465 Trihelix Transcription Factor Family AT1G70460 39.826 1.33e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pral5770g00027 Pkinase 6.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5770g00027 - - gmx:100781529 625.165