LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5770g00010	ATGGGTGCACCTAAGAAAAGCGGCGTTAAGATTTCGGAGGACGCCGAGGAATTGGCTCGCGTCCCTTTGCAAGCAATTCTTTTGGCTGATAGTTTTACTACCAAGTTCAGACCTATCACCCTTGAACGTCCAAAAGTTCTATTACCACTTGTAAATGTTCCCATGATAAATTACACGTTGTCGTGGCTTGAATCTGCTGGCGTTGAAGAGGTTTTTGTTTTCTGTTGCGCTCATTCGAAGCAAGTGACTTCCTATTTGAAGAAATCTGAGTGGCTCTCCCAACCAAATTTTACCGTCTCAATGATAGAGTCGCATCATTCCGTTAGTGCTGGAGATGCTTTGCGCCTAATATACGAGCGCAATGTGATACATGGAGATTTTGTCCTGATCAGTGGAGATACCGTAAGCAACATGTCACTTACTCAGGCTCTTCAAGAGCACAAGGAAAGAAGAAAGAAAGATAACGATGCAATAATGACCATGGTCATTAAGCGATCAAAACCTCATCCAGCCACTCATCAATCTCGGCTTGGGACTGATGAACTTTTTATGGCCATTGATCCCGCTACCAAGCAACTTTTGTATTATGAGGATAAGGCAGACTATTCCAAAGGGATTCTACATCTCGATAAATCCTTGCTTCTTGATAATCCTTCCATCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCACCGGAGGTTCTTAGCCTATTTACAGACAATTTTGACTATCAACATTTACGGCGACATTTTGTTAAGGGGTTGCTTGTTGATGATATTATGGGATATAAGATATTTACTCATGAAATTCACTCAAGCTATGCTGCTAGAATTGATAATTTCCGCAGCTATGACACTGTCAGCAAGGATATCATTCATAGATGGACATATCCATTGGTGCCAGATGTGAAGTTTTTTGGCAATGCTGCAACAAAACTTGAACGACAGGGAATGTATCGTGCATCAGAAATATCACAATCACATTCAGCAGTTGTTGGCCCATTTACAGTCATAGGATTTGGCACCAAAATTGGGGATAACACCAAAATTTCGAATTCAGTTATTGGAGAAGGATGTACAATTGGCTCAAATGTTCAGATAGAGGGATCCTATATATGGGACAATGTCACCATTGAAGATGGTTGTGAACTTAGGCATGCCATTGCATGTGATGGGGTGACTATCAGGTCAGGAGCTGTTCTGGAACCTGGTGTGGTTTTATCTTTCAAGGTTGTAATCGGGCCAGAGTTTGTTGTTCCTCCATACTCAAAAGTATCTTTATTTCAGCAGCCAATTGAGGAAGACAGTGATGAAGAGCTGGAATATGCTGACAGTACTGGTGTGAATAGCTTAGTGGATAAGTATGGTGCAGAGGCTGCATCGCAAGCATTGGAGACACAATCCCCTTCTGCATCGGAGTTAGGTGTGGGTGGGGCTGGTCATGTTTGGTCAAAATGTGATGGAGGCCACGAAGAAGAGTGGAGGCATTCAGTGGCTCCTATTCCTGCAGATAAAATTTCTGAGGCAGTGGAAATTTTGGAAGGTGATCTGGATTTGGCTCATGATGGCAGTATTCTTCCACCTTCTGGAGAGCTGAAACCAGATTCTAATGAATCAGATATTGATGATATTGAATATTCCAGAGATGATTCATACTTTGAGAAAGAGGTCGAAGCAACTTTTCTCAGGGCTGTGCACGAGAACATAAAAGAAGACCATGTTATTTTGGAAGTAAACTCCCTCAAGTTGTCATACAATAAGTTAGCCGCTGATTGTGCTGGAGCTATTTTCCATGCCATGATGAAATACGCTTTGGAGATCCCCCATAGTTCAGCTGGTAACTTGGTTCAGAACGTTGACAGTATAATAACGACATGGAGAAAACTTCTAACGTCCTACCTTGCTGACATTGATGAGCAGATTGAAGTGATACTGAAGTTTGAAGAAATGTGCCTGGAATCTGCTAAAGAGTATGCTCCATTGTTCACAAAGATTTTGAGTATTATGTATGACAAAGATATCATACGAGAAGATGCCGTTTTAAGTTGGGAAGACGAGAAGAGAGAGGCAGATGAGACGGATAAAGTTTTCGTTAAGCAGGCCCAGACTTTTATTCAATGGTTACGAGAGGCTCCTGAAGAAGACGATGATGAAGAATAG	2172	0.4194	MGAPKKSGVKISEDAEELARVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCAHSKQVTSYLKKSEWLSQPNFTVSMIESHHSVSAGDALRLIYERNVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDNDAIMTMVIKRSKPHPATHQSRLGTDELFMAIDPATKQLLYYEDKADYSKGILHLDKSLLLDNPSISLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIHSSYAARIDNFRSYDTVSKDIIHRWTYPLVPDVKFFGNAATKLERQGMYRASEISQSHSAVVGPFTVIGFGTKIGDNTKISNSVIGEGCTIGSNVQIEGSYIWDNVTIEDGCELRHAIACDGVTIRSGAVLEPGVVLSFKVVIGPEFVVPPYSKVSLFQQPIEEDSDEELEYADSTGVNSLVDKYGAEAASQALETQSPSASELGVGGAGHVWSKCDGGHEEEWRHSVAPIPADKISEAVEILEGDLDLAHDGSILPPSGELKPDSNESDIDDIEYSRDDSYFEKEVEATFLRAVHENIKEDHVILEVNSLKLSYNKLAADCAGAIFHAMMKYALEIPHSSAGNLVQNVDSIITTWRKLLTSYLADIDEQIEVILKFEEMCLESAKEYAPLFTKILSIMYDKDIIREDAVLSWEDEKREADETDKVFVKQAQTFIQWLREAPEEDDDEE	723

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5770g00010	723	FunFam	Translation initiation factor eIF-2B subunit epsilon	12	303	-	-
	Pral5770g00010	723	CDD	W2_eIF2B_epsilon	553	715	IPR044123	GO:0005085\|GO:0031369
	Pral5770g00010	723	CDD	eIF-2B_epsilon_N	23	239	IPR035543	-
	Pral5770g00010	723	ProSiteProfiles	W2 domain profile.	551	722	IPR003307	GO:0005515
	Pral5770g00010	723	SMART	542_3	631	718	IPR003307	GO:0005515
	Pral5770g00010	723	Pfam	eIF4-gamma/eIF5/eIF2-epsilon	643	722	IPR003307	GO:0005515
	Pral5770g00010	723	Pfam	Nucleotidyl transferase	25	165	IPR005835	GO:0009058
	Pral5770g00010	723	Pfam	Bacterial transferase hexapeptide (six repeats)	340	372	IPR001451	-
	Pral5770g00010	723	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	21	369	IPR029044	-
	Pral5770g00010	723	SUPERFAMILY	ARM repeat	557	715	IPR016024	-
	Pral5770g00010	723	Gene3D	-	547	723	-	-
	Pral5770g00010	723	PANTHER	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	12	723	-	-
	Pral5770g00010	723	FunFam	Trimeric LpxA-like enzyme	316	449	-	-
	Pral5770g00010	723	CDD	LbH_eIF2B_epsilon	341	419	-	-
	Pral5770g00010	723	Gene3D	Hexapeptide repeat proteins	319	452	-	-
	Pral5770g00010	723	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	10	303	IPR029044	-
	Pral5770g00010	723	SUPERFAMILY	Trimeric LpxA-like enzymes	268	429	IPR011004	-
	Pral5770g00010	723	FunFam	Translation initiation factor eIF-2B epsilon subunit	548	723	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5770g00010	Pral-Chr5770	52423	61044	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5770g00010	1	715	Eukaryotic Initiation Factors Gene Family	AT2G34970	65.975	0.0	959

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5770g00010	K03240		-	gmx:100784894	1189.87