LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5770g00009	ATGGGTGCACCTAAGAAAAGCGGCGTTAAGATTTCGGAGGACGCCGAGGAATTGGCTCGCGTCCCTTTGCAAGCAATTCTTTTGGCTGATAGTTTTACTACCAAGTTCAGACCTATCACCCTTGAACGTCCAAAAGTTCTATTACCACTTGTAAATGTTCCCATGATAAATTACACGTTGTCGTGGCTTGAATCTGCTGGCGTTGAAGAGGTTTTTGTTTTCTGTTGCGCTCATTCGAAGCAAGTGACTTCCTATTTGAAGAAATCTGAGTGGCTCTCCCAACCAAATTTTACCGTCTCAATGATAGAGTCGCATCATTCCGTTAGTGCTGGAGATGCTTTGCGCCTAATATACGAGCGCAATGTGATACATGGAGATTTTGTCCTGATCAGTGGAGATACCGTAAGCAACATGTCACTTACTCAGGCTCTTCAAGAGCACAAGGAAAGAAGAAAGAAAGATAACGATGCAATAATGACCATGGTCATTAAGCGATCAAAACCTCATCCAGCCACTCATCAATCTCGGCTTGGGACTGATGAACTTTTTATGGCCATTGATCCCGCTACCAAGCAACTTTTGTATTATGAGGATAAGGCAGACTATTCCAAAGGGATTCTACATCTCGATAAATCCTTGCTTCTTGATAATCCTTCCATCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCACCGGAGGTTCTTAGCCTATTTACAGACAATTTTGACTATCAACATTTACGGCGACATTTTGTTAAGGGGTTGCTTGTTGATGATATTATGGGATATAAGATATTTACTCATGAAATTCACTCAAGCTATGCTGCTAGAATTGATAATTTCCGCAGCTATGACACTGTCAGCAAGGATATCATTCATAGATGGACATATCCATTGGTGCCAGATGTGAAGTTTTTTGGCAATGCTGCAACAAAACTTGAACGACAGGGAATGTATCGTGCATCAGAAATATCACAATCACATTCAGCAGTTGTTGGCCCATTTACAGTCATAGGATTTGGCACCAAAATTGGGGATAACACCAAAATTTCGAATTCAGTTATTGGAGAAGGATGTACAATTGGCTCAAATGTTCAGATAGAGGGATCCTATATATGGGACAATGTCACCATTGAAGATGGTTGTGAACTTAGGCATGCCATTGCATGTGATGGGGTGACTATCAGGTCAGGAGCTGTTCTGGAACCTGGTGTGGTTTTATCTTTCAAGGTTGTAATCGGGCCAGAGTTTGTTGTTCCTCCATACTCAAAAGTATCTTTATTTCAGCAGCCAATTGAGGAAGACAGTGATGAAGAGCTGGAATATGCTGACAGTACTGGTGCAATGAATAGCTTAGTGGATAAGTATGGTGCAGAGGCTGCATCGCAAGCATTGGAGACACAATCCCCTTCTGCATCGGAGTTAGGTGTGGGTGGGGCTGGTCATGTTTGGTCAAAATGTGATGGAGGCCACGAAGAAGAGTGGAGGCATTCAGTGGCTCCTATTCCTGCAGATAAAATTTCTGAGGCAGTGGAAATTTTGGAAGGTGATCTGGATTTGGCTCATGATGGCAGTATTCTTCCACCTTCTGGAGAGCTGAAACCAGATTCTAATGAATCAGATATTGATGATATTGAATATTCCAGAGATGATTCATACTTTGAGAAAGAGGTCGAAGCAACTTTTCTCAGGGCTGTGCACGAGAACATAAAAGAAGACCATGTTATTTTGGAAGTAAACTCCCTCAAGTTGTCATACAATAAGTTAGCCGCTGATTGTGCTGGAGCTATTTTCCATGCCATGATGAAATACGCTTTGGAGATCCCCCATAGTTCAGCTGGTAACTTGGTTCAGAACGTTGACAGTATAATAACGACATGGAGAAAACTTCTAACGTCCTACCTTGCTGACATTGATGAGCAGATTGAAGTGATACTGAAGTTTGAAGAAATGTGCCTGGAATCTGCTAAAGAGTATGCTCCATTGTTCACAAAGATTTTGAGTATTATGTATGACAAAGATATCATACGAGAAGATGCCGTTTTAAGTTGGGAAGACGAGAAGAGAGAGGCAGATGAGACGGATAAAGTTTTCGTTAAGCAGGCCCAGACTTTTATTCAATGGTTACGAGAGGCTCCTGAAGAAGACGATGATGAAGAATAG	2175	0.4193	MGAPKKSGVKISEDAEELARVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCAHSKQVTSYLKKSEWLSQPNFTVSMIESHHSVSAGDALRLIYERNVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDNDAIMTMVIKRSKPHPATHQSRLGTDELFMAIDPATKQLLYYEDKADYSKGILHLDKSLLLDNPSISLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIHSSYAARIDNFRSYDTVSKDIIHRWTYPLVPDVKFFGNAATKLERQGMYRASEISQSHSAVVGPFTVIGFGTKIGDNTKISNSVIGEGCTIGSNVQIEGSYIWDNVTIEDGCELRHAIACDGVTIRSGAVLEPGVVLSFKVVIGPEFVVPPYSKVSLFQQPIEEDSDEELEYADSTGAMNSLVDKYGAEAASQALETQSPSASELGVGGAGHVWSKCDGGHEEEWRHSVAPIPADKISEAVEILEGDLDLAHDGSILPPSGELKPDSNESDIDDIEYSRDDSYFEKEVEATFLRAVHENIKEDHVILEVNSLKLSYNKLAADCAGAIFHAMMKYALEIPHSSAGNLVQNVDSIITTWRKLLTSYLADIDEQIEVILKFEEMCLESAKEYAPLFTKILSIMYDKDIIREDAVLSWEDEKREADETDKVFVKQAQTFIQWLREAPEEDDDEE	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5770g00009	724	FunFam	Translation initiation factor eIF-2B subunit epsilon	12	303	-	-
	Pral5770g00009	724	CDD	eIF-2B_epsilon_N	23	239	IPR035543	-
	Pral5770g00009	724	Pfam	Nucleotidyl transferase	25	165	IPR005835	GO:0009058
	Pral5770g00009	724	SMART	542_3	632	719	IPR003307	GO:0005515
	Pral5770g00009	724	Pfam	Bacterial transferase hexapeptide (six repeats)	340	372	IPR001451	-
	Pral5770g00009	724	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	21	369	IPR029044	-
	Pral5770g00009	724	Pfam	eIF4-gamma/eIF5/eIF2-epsilon	644	723	IPR003307	GO:0005515
	Pral5770g00009	724	PANTHER	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON	12	724	-	-
	Pral5770g00009	724	FunFam	Translation initiation factor eIF-2B epsilon subunit	549	724	-	-
	Pral5770g00009	724	Gene3D	-	548	724	-	-
	Pral5770g00009	724	Gene3D	Hexapeptide repeat proteins	319	452	-	-
	Pral5770g00009	724	FunFam	Trimeric LpxA-like enzyme	316	449	-	-
	Pral5770g00009	724	SUPERFAMILY	ARM repeat	558	716	IPR016024	-
	Pral5770g00009	724	CDD	W2_eIF2B_epsilon	554	716	IPR044123	GO:0005085\|GO:0031369
	Pral5770g00009	724	CDD	LbH_eIF2B_epsilon	341	419	-	-
	Pral5770g00009	724	ProSiteProfiles	W2 domain profile.	552	723	IPR003307	GO:0005515
	Pral5770g00009	724	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	10	303	IPR029044	-
	Pral5770g00009	724	SUPERFAMILY	Trimeric LpxA-like enzymes	268	429	IPR011004	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5770g00009	Pral-Chr5770	52423	61044	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5770g00009	1	716	Eukaryotic Initiation Factors Gene Family	AT2G34970	65.560	0.0	959

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5770g00009	K03240		-	gmx:100784894	1193.33