Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5761g00010 ATGGCAGATCTTGCTAGCAATGTAAATATTGAACAAGCACTTCTTGCTTTGAAAAAAGGCACTCAGTTAATTAAGTATAGTCGGAAAGGAAAGCCAAAACTGTGTCCATTCAGACTCTCACCGGATGAAACAACATTGATTTGGATAAGTCACAGAGGGGAAAGAAATCTGAATTTGTCTTGTGTTTCACATATTATCTGTGGACAGAGAACGGCTGTCTTTAGAAGATATTTGTGTCCCGAAAAGGATTCTCTATCATTTTCTCTTCTTTACAAAAACAGTGAACGGTCGCTTAATCTGATTTGCAAGGACAAAGCTGAAGCAGATGTATGGTTTACAGGCCTCAAGGCATTAATATCTCCAGGACAACGTCACAAGCATAGGCATACCAGAAGTGACTTTTCTAGTGTGCAAGGGAGCATCGACTTTACTCATGATGGTCATCCTTTTAGCGCAACGGTAGAGTACCCTTCGAGCAGCCTTCATGGTCGAATTTCCATTGATTCAGGTTCTCACGACACTTTATTGAATTGGGCAAGCTCGGATGTGGGGTTAGAACGTGCAAATATGCAATTGAGGGTAGGAGCCGGAGACAATTTCCGTCTTAGTGTGTCAAGTGCAGGATCTGGAATTGATGACATAGAATCGCTTGGAGACGTTTACATATGGGGAGAGGTTTGGGCAGATGGGGTTTCATCTGATGGACTGGGGAATCAAGTCCTTGTAAAGACAGATGTCTTGATTCCCAAGTCATTAGAGTCAAATGTTGTTCTTGATGCTCAACAGATTGCATCTGGTGTTCGCCATACTGCTCTAGTTACAAGGCAAGGAGAGCTTTTTACTTGGGGAGAAGAATGTGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTTAGCCGCCCTCGGCTAGTTGAATTCTTGGCAGTCACTAACATTGAATTTGTTGCATGTGGAGAGTATCATACATGTGCTGTATCTACATCCGGTGATTTATTCTCTTGGGGTGATGGTAATCACCATGCTGGAATTCTTGGTCATGGAACTGACATTAGCCACTGGATACCAAAGAGAATCATAGGCCCTTTGGAAGGACTTCAAGTTTTATCTGTTGCATGCGGCACATGGCATTCAGCATTGGCAACCTCCAATGGGAAGTTGTTCACCTTTGGTGATGGAGCATTTGGTGTCTTGGGCCATGGAGATATAGAGAATGTTCCATATCCAAAGGAGGTGCAATCATTGATCGGACTAAAAACCGTGAAGGTTGCATGTGGAGTGTGGCACACCGCAGCTATTGTAGAGGTTATGGGCCAAACTGGTTCAAATGTCTCATCTAGGAAACTCTTTACCTGGGGTGATGGTGACAAATATCGTTTGGGTCACGGTAACAAGGAAACTTACCTCCAACCCACCTGTGTCTCTGCACTTATTGAATACAATTTCCAACAGGTAGCATGTGGGCACACTTTGACAGTCGCCCTCGCTACAACAGGTCAAATCTTCACTATGGGTGCGACTGCATATGGTCAACTAGGGAATCCTCTCTCTGATGGAAAAGTGCCTGTCATGGTACAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATAGCATGTGGAGAACATCATGCTGCTGCCTTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACATACAAGATCGGAAATCTCCAACATTGGTTGAAGGCTTGAAAGACAGACATGTAAAAAGTATCTCATGCGGCTCAAACTTCATGTCTTGTGTTTGCATCCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCTCTGGTTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGTTATCACTGTGGATTGGTGCATTGTCATTCTTGTAGCTCTAAGAAGGCATTGAAAGCAGCATTAGCTCCAACACCCGGAAAACCACATCGTGTCTGTGATGCATGTTATGCAAAACTTAAAACTGCTGAGACTGGCCATGCTTCCACTTTAAGCAGAGGAACTACCCCTCCCCGTAGGTCAATAGATAATAGAGAAAAAATAGAATGGGTAGAGGCAAAGTCTTCAAGAGTTCTCTTATCTCCCATCACAGAACCTGTCAAATACCTTGAGATAAGGACTAATAAGCTAGGAATTAGATCTGATTCCTCTTCCATAGTTCGAGCTTCTCAAGTTCCATCACGTTTGCAGTTAAAAGATATTGCATTTCCAAGTTCACTGAGTACCATTCAGAATGCTTTCAAGCCTGCTGTGATACCTCCTAGTCCACCAAGAACCCCACCTGCCAACTCTAGATCTTCATCACCATATGCAAGAAGACCCAGCTCGCCACATTCATCGGCTCCTGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAAGACTAATGAGATTCTGAATCAAGAAGCATCGAAATTGCACAAACAAATTCGAAGTTTGAAGCAGAAGAACGAAACACAGGATACGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACCTCATTGGCTGGGGAGAAATCTTCAAAGCATCAAGTAGCAAATGAATTTATTAAGTCCATAAAAGATCAGTTGAAGGAAATGACTGACAAGCTGCCACCAGAGGTTTCTGACTGTCAAAGCTTGAAAATCATGCAAGACCAAGCAGAAGATTTTCTAAGGAAAACTGCAGAATCTGAAACTTTTTCCTCTTTACCATCAAGCTTAGAGTCTGATCGACTAAATGCAACTACTGATACAACTGCTTCGGATGGCGACTTTGCTAAACCACAAGAACAGAAACTGGAGGACAATGAAGATGCTGCAGGAACCAATTCATGTCAAGATGGTGGAAAAGTTCAAGAAAGCAATGGATCGTCTATTTCTACTGGAGGAGCAGCAGTACTTCCACAAAGCTCAGAACATGGTTCTGGCTCACTGAACTATTCCAGACCAAGGAAAGAAGGAGAGACAGAAACCATTGAACAATTTGCACCTGGTGTGTACGTGACACTCATAGTGCGGCCCGGTGGTAATAAAATTTTTAAACGAGTTAGATTCAGTAAGCGAAGGTTCGATGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGAGAAGGTGCTTAGGAAATATAGTCCATCAGCAACAAATTTTGCAGCTACAGGACCACCTAGCACTCGCCCTCCTCCGCCGCCGCCGCCTGTTGAAGAGAACGTTCAGTCTTCACCTTCCTAA 3261 0.4318 MADLASNVNIEQALLALKKGTQLIKYSRKGKPKLCPFRLSPDETTLIWISHRGERNLNLSCVSHIICGQRTAVFRRYLCPEKDSLSFSLLYKNSERSLNLICKDKAEADVWFTGLKALISPGQRHKHRHTRSDFSSVQGSIDFTHDGHPFSATVEYPSSSLHGRISIDSGSHDTLLNWASSDVGLERANMQLRVGAGDNFRLSVSSAGSGIDDIESLGDVYIWGEVWADGVSSDGLGNQVLVKTDVLIPKSLESNVVLDAQQIASGVRHTALVTRQGELFTWGEECGGRLGHGIDKDFSRPRLVEFLAVTNIEFVACGEYHTCAVSTSGDLFSWGDGNHHAGILGHGTDISHWIPKRIIGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGAFGVLGHGDIENVPYPKEVQSLIGLKTVKVACGVWHTAAIVEVMGQTGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFQQVACGHTLTVALATTGQIFTMGATAYGQLGNPLSDGKVPVMVQDKLVGEFVEEIACGEHHAAALTSRSELYTWGKGANGRLGHGDIQDRKSPTLVEGLKDRHVKSISCGSNFMSCVCIHKWVSGVDQSVCSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKAALAPTPGKPHRVCDACYAKLKTAETGHASTLSRGTTPPRRSIDNREKIEWVEAKSSRVLLSPITEPVKYLEIRTNKLGIRSDSSSIVRASQVPSRLQLKDIAFPSSLSTIQNAFKPAVIPPSPPRTPPANSRSSSPYARRPSSPHSSAPGFSKSIIDSLRKTNEILNQEASKLHKQIRSLKQKNETQDTEIQKLQKNVEEATSLAGEKSSKHQVANEFIKSIKDQLKEMTDKLPPEVSDCQSLKIMQDQAEDFLRKTAESETFSSLPSSLESDRLNATTDTTASDGDFAKPQEQKLEDNEDAAGTNSCQDGGKVQESNGSSISTGGAAVLPQSSEHGSGSLNYSRPRKEGETETIEQFAPGVYVTLIVRPGGNKIFKRVRFSKRRFDEQQAEEWWSKNKEKVLRKYSPSATNFAATGPPSTRPPPPPPPVEENVQSSPS 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5761g00010 1086 ProSiteProfiles BRX domain profile. 999 1054 IPR013591 -
Pral5761g00010 1086 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1053 IPR013591 -
Pral5761g00010 1086 SUPERFAMILY PH domain-like 10 119 - -
Pral5761g00010 1086 Gene3D - 444 603 IPR009091 -
Pral5761g00010 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 263 273 IPR000408 -
Pral5761g00010 1086 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 606 668 IPR017455 -
Pral5761g00010 1086 SMART fyve_4 598 669 IPR000306 GO:0046872
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 948 988 - -
Pral5761g00010 1086 CDD FYVE_like_SF 612 664 - -
Pral5761g00010 1086 Gene3D - 6 129 IPR011993 -
Pral5761g00010 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 497 IPR000408 -
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 906 935 - -
Pral5761g00010 1086 Gene3D - 173 443 IPR009091 -
Pral5761g00010 1086 Pfam Pleckstrin homology domain 11 119 IPR001849 -
Pral5761g00010 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 383 IPR000408 -
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 762 800 - -
Pral5761g00010 1086 Pfam Transcription factor BRX N-terminal domain 854 888 IPR027988 -
Pral5761g00010 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 1065 1086 - -
Pral5761g00010 1086 Coils Coil 803 858 - -
Pral5761g00010 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 328 IPR000408 -
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 1053 1086 - -
Pral5761g00010 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Pral5761g00010 1086 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 536 546 IPR000408 -
Pral5761g00010 1086 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 55 875 - -
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 778 800 - -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 386 400 IPR000408 -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 260 273 IPR000408 -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 279 295 IPR000408 -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 545 566 IPR000408 -
Pral5761g00010 1086 PRINTS Chromosome condensation regulator RCC1 signature 487 505 IPR000408 -
Pral5761g00010 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 549 IPR000408 -
Pral5761g00010 1086 SUPERFAMILY FYVE/PHD zinc finger 602 670 IPR011011 -
Pral5761g00010 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Pral5761g00010 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 448 494 IPR000408 -
Pral5761g00010 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 328 379 IPR000408 -
Pral5761g00010 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Pral5761g00010 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 277 325 IPR000408 -
Pral5761g00010 1086 Pfam Regulator of chromosome condensation (RCC1) repeat 551 595 IPR000408 -
Pral5761g00010 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 679 IPR013083 -
Pral5761g00010 1086 MobiDBLite consensus disorder prediction 905 1001 - -
Pral5761g00010 1086 Pfam FYVE zinc finger 602 668 IPR000306 GO:0046872
Pral5761g00010 1086 SUPERFAMILY RCC1/BLIP-II 217 603 IPR009091 -
Pral5761g00010 1086 CDD PH_PLC_plant-like 10 120 - -
Pral5761g00010 1086 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Pral5761g00010 1086 FunFam PH, RCC1 and FYVE domains-containing protein 1 193 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5761g00010 Pral-Chr5761 76630 83268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5761g00010 996 1067 Major Intrinsic Protein MIP AT1G31880 36.111 4.25e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5761g00010 - - qsa:O6P43_021414 1454.5