Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5761g00002 ATGGTGCGAGCTCCTTGCTGTGAGAAGATGGGACTGAAGAAGGGTCCTTGGACTCCCGAGGAAGACCAACTCTTGGTCTCCTACATTCAAAAATATGGCCATGGCAATTGGCGAGCCCTCCCGAAGCAAGCAGGTCTTCTAAGATGTGGGAAGAGTTGCAGACTCCGCTGGATCAATTATTTAAGGCCAGATATAAAGAGAGGAAACTTCACAGCAGACGAAGAAGAAACCATCATTAAGCTGCATGAGATGCTTGGCAACAGGTGGTCAGCAATTGCAGCAAAGCTACCAGGAAGAACAGACAACGAGATTAAAAATGTTTGGCACACCCACTTGAAGAAGAGGCTTCAAAAAACAAATCAAGTGCAATCCATCGTTAATTCGGATTCCAAAACCAGAGGCTCCAAACTTTCAATCAAACGATCTGTTTCCAATTCCAGCTCAGTGACAACTCAATCAGAAGCTGTCAGTTTCATCGGTTTCCCAGAAAAGGACACAACATCGTCAGTTTCAGCGTGTACTGCTTCTTCTAGTGATTGTGGCCGGAGCATGAATGTGGCCATGAAGTGCGAAGACGTAGACTCATCTCTCGAGCATTATGTATTGCCTCAGATTGATGAAAGCTTCTGGTCAGAAGCAGCAATGGATGAGAATAGCCCCACCATTGACAATAAATTACCAGTTCATCAATACCCATTTGATTCTGCAGAATCTTTCCAACAAGGTTATGGGTATAATGGTTTAAACTTTGACGATGGAATGGATTTCTGGTATGACATATTCATCAGAACAGGGGATTTTACAGAGTTGACGTTCTGA 819 0.4396 MVRAPCCEKMGLKKGPWTPEEDQLLVSYIQKYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTADEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLQKTNQVQSIVNSDSKTRGSKLSIKRSVSNSSSVTTQSEAVSFIGFPEKDTTSSVSACTASSSDCGRSMNVAMKCEDVDSSLEHYVLPQIDESFWSEAAMDENSPTIDNKLPVHQYPFDSAESFQQGYGYNGLNFDDGMDFWYDIFIRTGDFTELTF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5761g00002 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5761g00002 272 CDD SANT 69 112 IPR001005 -
Pral5761g00002 272 Gene3D - 13 66 - -
Pral5761g00002 272 CDD SANT 16 61 IPR001005 -
Pral5761g00002 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Pral5761g00002 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5761g00002 272 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral5761g00002 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5761g00002 272 Gene3D - 68 143 - -
Pral5761g00002 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral5761g00002 272 FunFam MYB-related transcription factor 13 66 - -
Pral5761g00002 272 SMART sant 13 63 IPR001005 -
Pral5761g00002 272 SMART sant 66 114 IPR001005 -
Pral5761g00002 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5761g00002 272 FunFam MYB transcription factor 68 146 - -
Pral5761g00002 272 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5761g00002 Pral-Chr5761 26519 28491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5761g00002 1 270 MYB Transcription Factor Family AT2G31180 49.817 2.13e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5761g00002 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5761g00002 K09422 - gmx:100101837 329.717