Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5757g00012 ATGGATCTTGCAGGAAGAAGATTGCTGATTTCTGGGTCACAACCTCTTTCGCCATTATCAAGCCCAGTGAGTTCAATCCTTCACTCACATTCTCATTCTGCGAGTACCAGTTTTCCCATTATAGCCATCGCTATAATAGGGATACTAGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGCATAGATCTCCTAAGACGGTTCTCTCCATCCCGGAGGCGAGAAGAGCCACCGATGACATATTCACCGGCGGGCACAGAGCCTCGAGGACTCGACGAGGCGGTGATCCGATTAATCCCAGTCATCCATTACAAAGCAGAGGAAAACAGAGAATCCGGAGAGCGAAGCTTCACGGAATGCTCTGTTTGCTTGAACGAGTTCCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCAGCCATGTGTTCCACATAGATTGCATCGATGTTTGGCTTCAGAACAACGCCAATTGCCCACTTTGCAGAACAAGCATTTCTCTATCAAGCAGATTCCAAATCGATCAGATTCTAAATTCCAGACCCTCCTCGCAAGATCGACGCCCGTATGGCGAAAATCTCAGTGGTGGGGATGAAGATTTCGTTGTGATTGAACTCAGCACCAACGGTCACGGTAGAGACCAGAACTCCAATGGAAGGCAGGAAAGAGAAAACCCACCACGAGAGGTGAGTCCTTCGCCTGGGAAGATAATGGGGCAGCAGAAAAAACCATGGAAGTTTCAGAAAGTGACGAGCATGGGGGATGAATGCATCGACACTAGAGGTAAAGATGAGCAATTTTCAGTACAGCCCATAAGAAGGTCCTTCTCCATGGATTCTTCAGGGGATAGACAGTTGTACATGGCAGTTCAAGAAGCTTTGAAGAAGCAGAACAGGCAAGAAGTGAGTGAGGTATCATCGTCCTGCATTGAAGGGTGTGGTAGCAGTAGTGGTAGAGTCAAAAGATCATTCTTTTCCTTCGGACATGGTAGCAGTAGATCCAGAAGTTCAGTCCTACCTGTTTATGTGGACCACTGA 1065 0.4751 MDLAGRRLLISGSQPLSPLSSPVSSILHSHSHSASTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREEPPMTYSPAGTEPRGLDEAVIRLIPVIHYKAEENRESGERSFTECSVCLNEFREKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLSSRFQIDQILNSRPSSQDRRPYGENLSGGDEDFVVIELSTNGHGRDQNSNGRQERENPPREVSPSPGKIMGQQKKPWKFQKVTSMGDECIDTRGKDEQFSVQPIRRSFSMDSSGDRQLYMAVQEALKKQNRQEVSEVSSSCIEGCGSSSGRVKRSFFSFGHGSSRSRSSVLPVYVDH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5757g00012 354 PANTHER RING-H2 FINGER PROTEIN ATL16 20 350 IPR044600 GO:0016567|GO:0016740
Pral5757g00012 354 SMART ring_2 130 171 IPR001841 -
Pral5757g00012 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 177 IPR013083 -
Pral5757g00012 354 MobiDBLite consensus disorder prediction 218 254 - -
Pral5757g00012 354 CDD RING-H2_EL5-like 129 172 - -
Pral5757g00012 354 FunFam E3 ubiquitin-protein ligase ATL6 90 178 - -
Pral5757g00012 354 Pfam Ring finger domain 129 172 IPR001841 -
Pral5757g00012 354 SUPERFAMILY RING/U-box 129 178 - -
Pral5757g00012 354 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5757g00012 Pral-Chr5757 89193 90558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5757g00012 31 353 C3H Transcription Factor Family AT1G04360 54.520 6.52e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5757g00012 - - gmx:100775286 395.586