Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5757g00009 ATGGATTCGCTGGAAGGTGGTAGCTGCTGGGATTTCCTCGATTACAGCTTGATCGACGATACACCGCCGGCGCCCACCGATTTTCTTTGGTCCAATCAGAGCGTGAGCTCGGGAATTGACTTTTCAGGCGGGGCTATTGTTCCTCAAGAGAGCACCCGGAAGAGAATACGCCCCAATTTGTCAAGCAATCCAGGAACAAAAGCTTGTCGTGAGAAAATGCGGAGGGAGAAACTGAATGACAGATTTTATGACTTGAGCTCTGTTTTGGAGCCTGGGAGACCTGTGAGGACTGATAAATCGGCTATACTTGATGACGCCATCAGAATCTTGAATCAGCTTAAAAATGAAGCTCAGGAACTCAAAGAAACAAATGAGAAGTTGTTAGAGGAAATAAAATTGTTGAAGGCAGAGAAACATGAACTTCGTGAAGAGAAACTTGTCCTGAAAGCAGATAAAGAAAGGATTGAGGCACAGTTAAAAGCACTGCCAGTTTCACCCGCAGGATTTATGCCTCCCCATGCCGCTGCTTATCAAGCTGGGGTCAACAAAATGGCTCTTTTCCCAGGCTATGGTTACTACCCCATGTGGCAATATCTGCCTGTGTCCGCTCGTGACACATCGCAGGATCATGAACTCAGGCCTCCAGCTGCTTAG 654 0.4725 MDSLEGGSCWDFLDYSLIDDTPPAPTDFLWSNQSVSSGIDFSGGAIVPQESTRKRIRPNLSSNPGTKACREKMRREKLNDRFYDLSSVLEPGRPVRTDKSAILDDAIRILNQLKNEAQELKETNEKLLEEIKLLKAEKHELREEKLVLKADKERIEAQLKALPVSPAGFMPPHAAAYQAGVNKMALFPGYGYYPMWQYLPVSARDTSQDHELRPPAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5757g00009 217 SMART finulus 68 119 IPR011598 GO:0046983
Pral5757g00009 217 CDD bHLH_AtILR3_like 67 142 - -
Pral5757g00009 217 Gene3D - 66 145 IPR036638 GO:0046983
Pral5757g00009 217 Coils Coil 103 158 - -
Pral5757g00009 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 137 IPR036638 GO:0046983
Pral5757g00009 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Pral5757g00009 217 PANTHER BHLH TRANSCRIPTION FACTOR 7 217 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pral5757g00009 217 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Pral5757g00009 217 FunFam Transcription factor bHLH104 65 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5757g00009 Pral-Chr5757 76091 78588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5757g00009 42 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 63.934 2.71e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5757g00009 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5757g00009 - - qsa:O6P43_003232 296.204