Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5757g00003 ATGGAGAGAAAGAGTTTGAACACCAGCGTTAAAGATGGCACTTTCACCACCAACAGCAACAAGAAACAAATGATGAAAGAATACTGGGACTGCAAATCTCAGATCAGCTGTGGAGGGGATGATTATATAAATGGATTCTCGTGGCCTCCACGATCATACACTTGTAGCTTCTGCAAGAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCACATGAATGTACATAGGAGGGACAGAGCCAGGCTCAGGCAGTCACCCCCTACTCCATCTCATGACAGTCCCTCCCCCATGCTCAACCTAAATCTTAACCCTACCTCTGGTCCTGGCTTTTCAACCCCAACTATGTCCTCGTTACCATCTTCTTCTTCTTCTACAATGCTCAAAAATTCATTCTCTGCTACCACCTTACCTTCCTTGTTTTCTCCTATACTTTCTCCGTCTTCTCCTCCCCTTGCATCTACATCTCCTTCTTATGATCTCAAAAATCGGGTTGTGGACGGTATAATGTTGAACCCCTCAAGCACGAAGGCCTCAGAATCTACAAACGTGAAGAATGCAGATTCTTTATTGGGGTTTGGAGACTGTGACGACCCATTCGCCAAAGAAGATGGTTGCAAAGTGGTAAAAAAGGCTGAGATCATTAGGTTGGACTTGCATATAGGCTTGCTTAGCGATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGGCACTTACTCCTAG 723 0.455 MERKSLNTSVKDGTFTTNSNKKQMMKEYWDCKSQISCGGDDYINGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPTPSHDSPSPMLNLNLNPTSGPGFSTPTMSSLPSSSSSTMLKNSFSATTLPSLFSPILSPSSPPLASTSPSYDLKNRVVDGIMLNPSSTKASESTNVKNADSLLGFGDCDDPFAKEDGCKVVKKAEIIRLDLHIGLLSDSKDDLDLELRLGTYS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5757g00003 240 SMART c2h2final6 53 75 IPR013087 -
Pral5757g00003 240 Gene3D Classic Zinc Finger 49 93 - -
Pral5757g00003 240 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Pral5757g00003 240 MobiDBLite consensus disorder prediction 70 124 - -
Pral5757g00003 240 Pfam C2H2-type zinc finger 53 77 - -
Pral5757g00003 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Pral5757g00003 240 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Pral5757g00003 240 PANTHER OS07G0101800 PROTEIN 21 238 - -
Pral5757g00003 240 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5757g00003 Pral-Chr5757 44938 45660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5757g00003 29 237 C2H2 Transcription Factor Family AT3G23130 42.453 4.10e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5757g00003 zf-C2H2_6 4.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5757g00003 - - vvi:100263211 186.037