Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5747g00003 ATGGCTTTGGAGGCTCTCAATTCTCCCACTGCTACTCCCAATCCTGTGTTCAAAGACGATGATCCTCACTCTATCGAGGCTTGGACCAAGGGCAAGCGATCCAGACGCCACCGTTTTGATCAGAATCCGCCGTCCGCTGAGGAAGAGTACCTCGCTATCTGTCTCCTCATGCTCGCTCAGGGTGGCGGCGCCAATCCCAATACGACTTCGTCTTCCTCCCCTGATCCTTCTTCTGCTTCTCCGGTCAAGCTTTCTTATAAGTGCTCTGTCTGTAACAAGTCCTTCCCTTCCTACCAAGCGCTCGGAGGACACAAGGCCAGCCACCGCAAGTCATCCTCCTCCTCCGATCACCACCCTCCCGCAGCCGACAATTCATCCGCCTCCACCTCCACCGCCGCACCTGTTGTTGGCGGCGGCAAGCTGCACGAGTGTTCAATCTGTCACAAGGCTTTCCCCACCGGCCAGGCCCTCGGCGGCCACAAGCGCTGCCACTATGACGGTGGCAACGCCAACAACAGTGGCACCGGCGGTGGAACGACGGTGATCACATCGTCTGAGGGGAACACCTCATCGGTCACGCACAGCCACCACCGCGGGTTTGACCTGAACCTCCCTGCTCCTTTGACCGACTTCTCCCCGGCTGGGATCATCGGTGCCGCCGGGAAGAGTGTGAGGATCGGAGAAGAAGAGGTGGAAAGCCCGCTACCGACGCCCGCCACCAAGAAGCCTCGTTTGTTCATGGACGAAGAGTGA 753 0.5896 MALEALNSPTATPNPVFKDDDPHSIEAWTKGKRSRRHRFDQNPPSAEEEYLAICLLMLAQGGGANPNTTSSSSPDPSSASPVKLSYKCSVCNKSFPSYQALGGHKASHRKSSSSSDHHPPAADNSSASTSTAAPVVGGGKLHECSICHKAFPTGQALGGHKRCHYDGGNANNSGTGGGTTVITSSEGNTSSVTHSHHRGFDLNLPAPLTDFSPAGIIGAAGKSVRIGEEEVESPLPTPATKKPRLFMDEE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5747g00003 250 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pral5747g00003 250 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Pral5747g00003 250 Pfam C2H2-type zinc finger 86 110 - -
Pral5747g00003 250 Pfam C2H2-type zinc finger 142 166 - -
Pral5747g00003 250 MobiDBLite consensus disorder prediction 1 44 - -
Pral5747g00003 250 MobiDBLite consensus disorder prediction 101 134 - -
Pral5747g00003 250 SUPERFAMILY beta-beta-alpha zinc fingers 86 164 IPR036236 -
Pral5747g00003 250 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 206 IPR044653 GO:0003700
Pral5747g00003 250 MobiDBLite consensus disorder prediction 117 133 - -
Pral5747g00003 250 Gene3D Classic Zinc Finger 84 164 - -
Pral5747g00003 250 MobiDBLite consensus disorder prediction 227 250 - -
Pral5747g00003 250 SMART c2h2final6 142 164 IPR013087 -
Pral5747g00003 250 SMART c2h2final6 86 108 IPR013087 -
Pral5747g00003 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Pral5747g00003 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5747g00003 Pral-Chr5747 42272 43367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5747g00003 1 245 C2H2 Transcription Factor Family AT1G27730 47.287 1.26e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5747g00003 zf-C2H2_6 3.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5747g00003 - - gmx:100806788 216.083