Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00082 ATGGGAAAGATAATGGTAGAAAGTACAACTAGAGTTACGTTACTGTTAATGGCTACCTTGGCTATTACTGTTCCATGCCTCGTCGACGCTAACATCGGAGAATTCGATTATTATCTCCGAGGAAAAGCTAAGGAGGCCCGGAGAGTTGCTCTTGAAGCATATGAACCAAACCCTTTGAACGTCACTTCAGAGCTCAATATGCACGTTCATCTGTACGTAAGCTCTTCGATGAATGAGGCCAACATGTCCACCAATACCAGAGGGAGGGACCTGGGGGAGAGGAAACGCAAAGGACATTGCCTGACTACCAACCCAATCGACCGATGCTGGAGATGCGACAAAGACTGGGAGAAAAATCGCTTCAATTTAGCCAAATGTGCGATGGGTTTCGGCCGCAAGACCACGGGCGGGCTGGGTGGCAAGATCTACGTCGTGACAGATTCTTCCGACGACGACGTAGCTAACCCGAAACCCGGAACTCTGAGGTACGGGGCAATTCAGAAGGAGCCATTGTGGATCATATTCGCATACAGCATGGTGATCAAGTTGAAACAGGAGTTGCTGGTGAATTCCGACAAGACAATCGACGGACGTGGAGCTAATGTTCAGATAAAGAGCGGCGGCGGCCTCACTCTACAATTCGTCAACAACGTCATCATCCACAACCTTCGCATTCGCAATATCAAAGCTAAGAAGGGTGGTCTGGTAAGGGATGCCCCCGACCATGTCGGGCTGAGAACTAGAAGCGACGGTGACGCCATCAGCCTCTTCGGTTCCACCAACGTCTGGATCGATCACATTTCAATGTCCAACGCCGACGATGGGCTGGTCGACGCCATCATGGGTTCTACCGCCATTACAATATCAAATTGCCACATGACCAGGCACAACGACGTGATGCTGTTTGGAGCCGGAGACGTGTATAAACAGGACCAGGTGATGCAGGTAACGGTGGCTTTCAACCACTTCGGGAACGGATTGATACAGAGGATGCCCAGATGCAGACATGGATGGTTCCATGTGGTGAACAACGACTACCATAACTGGATAATGTACGCCATCGGAGGAACGGCGAATCCGACCATACTCAGCCAAGGAAACCGATTCAGTGCTCCGAACAACGTAGCAGCGAAGCAGGTTACCAACAGAGTGAGTGCGCCAGAATCGGAGTGGCAAAACTGGCCGTGGCAGTCGGAGAATGACGAGTTTGTAAACGGAGCTTTTTTCGTACCATCGGGAAAACCTATAACCACATCTATAACCCAGAGGGAGGATTTGATACCACCCAGACCAGGGATCGAAGCTCCCGAACTTGCTCGCTTTTCGGGTCAGATCAAGTGCAAGGTCGGCAAGCCTTGTTAG 1362 0.5073 MGKIMVESTTRVTLLLMATLAITVPCLVDANIGEFDYYLRGKAKEARRVALEAYEPNPLNVTSELNMHVHLYVSSSMNEANMSTNTRGRDLGERKRKGHCLTTNPIDRCWRCDKDWEKNRFNLAKCAMGFGRKTTGGLGGKIYVVTDSSDDDVANPKPGTLRYGAIQKEPLWIIFAYSMVIKLKQELLVNSDKTIDGRGANVQIKSGGGLTLQFVNNVIIHNLRIRNIKAKKGGLVRDAPDHVGLRTRSDGDAISLFGSTNVWIDHISMSNADDGLVDAIMGSTAITISNCHMTRHNDVMLFGAGDVYKQDQVMQVTVAFNHFGNGLIQRMPRCRHGWFHVVNNDYHNWIMYAIGGTANPTILSQGNRFSAPNNVAAKQVTNRVSAPESEWQNWPWQSENDEFVNGAFFVPSGKPITTSITQREDLIPPRPGIEAPELARFSGQIKCKVGKPC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00082 453 Pfam Pectate lyase 184 369 IPR002022 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Pral5741g00082 453 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Pral5741g00082 453 Gene3D - 103 446 IPR012334 -
Pral5741g00082 453 SUPERFAMILY Pectin lyase-like 104 432 IPR011050 -
Pral5741g00082 453 PANTHER PECTATE LYASE 18-RELATED 46 451 IPR045032 GO:0030570
Pral5741g00082 453 Pfam Pectate lyase, N terminus 31 89 IPR007524 GO:0030570
Pral5741g00082 453 SMART amb_all 178 375 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00082 Pral-Chr5741 415010 416532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00082 12 453 Polysaccharide Lyase AT1G14420 54.185 1.35e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00082 K01728 - gmx:100780236 575.859