Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00081 ATGGCACTTAGATTTACGCTATTGTTAGCCGCCTTGGCCATTACCATTCCATGCCTCGAGGCTAACATTGGAGAGATTGACGACTATCTGGAAGAGAAAGCAGAGCAGGCCCACCGAATGGCTCTCGAGACCTACGATGCCGACCCTTTAAACGTTACGTCCGAGCTTAACATGCATGTTCACCTTGCGATGGATGAAGCCAACAGCAGTAGAGGGAGGGACCTGAGGGAGAAGAAGAGACGCAAGGAAAGATGCATAGCCACCAACCCAATCGACCGATGCTGGAGATGCGACCCAAACTGGGAGAAGAATCGCTTTAGGTTAGCCGAATGCGCCATCGGTTTCGGCCGCAAGGCCAAAGGAGGTTTGGGCGGTCCGATCTACGTCGTCACCGATGATTCCGACATCGACATGGTTAACCCCAAACCCGGAACTCTCAGGCACGCGGTGATCCAGAAGGGGCCTTTGTGGATCGTATTCGAACGCAACATGGTGATCAAGTTGAAGGAGGAGTTGCTGGTGTCATCGGACAAGACCATCGACGGTCGTGGAGCCAATGTTCAGATCAGAAACGGTGCCGGCATCACTTTGCAGTTCGTGAATAACGTCATCATCCACGACCTTCGCATTCGCAACATCAAACCTAAGAACGGCGGTACAATAAGGGACTCCGTCGACCACATTTCGGTTAGAACCAGAAGTGACGGCGACGCCATCGGCCTCTTCGGTGCCACCAATATTTGGATCGATCATATCTCCCTCGCCAACGCCGAGGACGGCCTCATCGACGTCATCATGGGTTCCACCGGCATTACCATCTCGAATTGCCACCTGACCAGACACAACGATGTGATGCTCTTCGGAGGTGGTGACGTGTATCGGCAGGACAAGGTGATGCAGATAACAGTCGCGTTCAACCACTTCGGGAACGGATTGATACAGAGGATGCCGAGGTGCAGATATGGGTTCTTCCACGTGGTGAACAACGATTATACTCACTGGATAATGTACGCCATTGGAGGAAGCTCGAACCCGACCATACTGAGCCAAGGAAATCGATTCATTGCTCCGAACAACGACGCGACGAAGGAGATTACGAATAGGGTCGGAACGCCGCCGTCGGTGTGGAAAGACTGGCAATGGCAATCGGAGAATGACCAGTTGGATAACGGAGCCGTTTTCATTCAATCGGGAGGTCCAATAACCTCCGTCGACAGAGGAAGTTTGATCCCACCGAGACCTGGCATTGAAGCTCCATTGCTTGCAAAATATTCGGGTGCGCTAGCCTGCAGGCGTGGGAAGCCATGTTAG 1311 0.5278 MALRFTLLLAALAITIPCLEANIGEIDDYLEEKAEQAHRMALETYDADPLNVTSELNMHVHLAMDEANSSRGRDLREKKRRKERCIATNPIDRCWRCDPNWEKNRFRLAECAIGFGRKAKGGLGGPIYVVTDDSDIDMVNPKPGTLRHAVIQKGPLWIVFERNMVIKLKEELLVSSDKTIDGRGANVQIRNGAGITLQFVNNVIIHDLRIRNIKPKNGGTIRDSVDHISVRTRSDGDAIGLFGATNIWIDHISLANAEDGLIDVIMGSTGITISNCHLTRHNDVMLFGGGDVYRQDKVMQITVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSNPTILSQGNRFIAPNNDATKEITNRVGTPPSVWKDWQWQSENDQLDNGAVFIQSGGPITSVDRGSLIPPRPGIEAPLLAKYSGALACRRGKPC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00081 436 SUPERFAMILY Pectin lyase-like 89 400 IPR011050 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Pral5741g00081 436 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Pral5741g00081 436 PANTHER PECTATE LYASE 18-RELATED 37 434 IPR045032 GO:0030570
Pral5741g00081 436 Gene3D - 88 413 IPR012334 -
Pral5741g00081 436 Pfam Pectate lyase 169 354 IPR002022 -
Pral5741g00081 436 Pfam Pectate lyase, N terminus 22 71 IPR007524 GO:0030570
Pral5741g00081 436 SMART amb_all 163 360 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00081 Pral-Chr5741 411387 412868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00081 5 436 Polysaccharide Lyase AT1G14420 54.810 1.25e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00081 K01728 - gmx:100785801 589.341