Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00079 ATGGAAATGATAACAAATGGTGAAGAGAGCATAGGAAGGAGGAGGATGTTCATGGAAGGATGTGATTTCCAAGGAACTCGCACTGTCAAGAGACGAAGAAGAGAGCATGGAGCAGCTGCACTGAACTGTGATGATGATCTAAGTCAGAAGAGAGAGCAAGTTGATCAAAATTCGACCACCCATACAGCTAAGAGAAGTTCAAGATTTCGAGGTGTTAGCAGACACAAATGGACTGGTCGGTATGAGGCTCACCTGTGGGACAAACTCTCTTGGAATGTAACACAGAAGAAGAAAGGGAAGCAAGTTTACCTTGGAGCTTACGATGAAGAAGAATCTGCAGCCAGAGCATACGATTTAGCTGCACTGAAATACTGGGGAACTTCAACTTTCACCAACTTTCCGATATCAGATTACATGAAAGAGATAGAGATAATGCAGACTATGACAAAAGAGGAGTATTTGGCCACTTTAAGAAGGAAGAGTAGCGGCTTTTCAAGAGGCATATCAAAATATAGGGGTGTTGCAAGGCACCACCAGAATGGTAGATGGGAAGCAAGGATAGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACTTACAGCACCCAGGAGGAAGCTGCTCGTGCTTATGACATTGCGGCCATTGAGTACAGGGGGATTCATGCTGTAACCAACTTTGATTTGAGCAATTACATAACAATGTTAAGACCTGCTAGAGGAAATATCACAGAGCCAACACTTGAATCACAGATCGTACCAGAGTTTCAGACAATGGCATCTCCATCTAATTATACTTCAGTAAAGGAGTCCAAGACCTTGGTCCTTGACGGCAATTTTTGCAACTCAGATTACCTGAAGTCTTCACGAAAGCAAGAGGTCCTTGAGAAGGAAACTGCTTTTATCTCAAGCAACAAGTCATCTTCACCTACTGCTCTTGGCCTTCTTCTCCGTTCTTCAATTTTCAGGGAATTAGTGGAAAAGAATTTGAATATATTTGGAGATGAAACTGATGGGGAAGACACAAAGGATCGACAACCACATATATCCGGTGATGATGAGTTGAGTAGAATATTCTATGATAGTATTGATGATATCCCATTTGCCAATGATCTTAAAAGATACAATTTTCCAGGCGAAAACCACTCCGTCTTATGA 1158 0.4206 MEMITNGEESIGRRRMFMEGCDFQGTRTVKRRRREHGAAALNCDDDLSQKREQVDQNSTTHTAKRSSRFRGVSRHKWTGRYEAHLWDKLSWNVTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYMKEIEIMQTMTKEEYLATLRRKSSGFSRGISKYRGVARHHQNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSNYITMLRPARGNITEPTLESQIVPEFQTMASPSNYTSVKESKTLVLDGNFCNSDYLKSSRKQEVLEKETAFISSNKSSSPTALGLLLRSSIFRELVEKNLNIFGDETDGEDTKDRQPHISGDDELSRIFYDSIDDIPFANDLKRYNFPGENHSVL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00079 385 Gene3D AP2/ERF domain 67 136 IPR036955 GO:0003700|GO:0006355
Pral5741g00079 385 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Pral5741g00079 385 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Pral5741g00079 385 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 Pfam AP2 domain 67 126 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 266 - -
Pral5741g00079 385 CDD AP2 67 136 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
Pral5741g00079 385 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
Pral5741g00079 385 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Pral5741g00079 385 SUPERFAMILY DNA-binding domain 67 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00079 Pral-Chr5741 393986 396074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00079 112 236 AP2-EREBP Transcription Factor Family AT5G57390 33.333 8.16e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral5741g00079 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00079 - - gmx:100779867 528.865