Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00046 ATGAGGAAACGTCAAGTTGTGGTGAGGAGAGAGGAGCCTGCTCGGTGCTCAAGCTCTTCGTCTTTTACTGTTAGGAGTGTGAGATATGCAGAGTGCCAAAAGAATCATGCGGCTAACGTTGGAGGATACGCCGTGGACGGTTGCCGCGAGTTCATGGCCAGTGGAGATGAAGGTACAACCGCTGCTCTGACCTGTGCTGCTTGTGGTTGCCACAGGAACTTTCACAAAAGAGAGGTAGAGACTGAAGTAGTTTGTGAGTGCTCTTCACCTCCCTCCAACGGGACTTGA 288 0.5174 MRKRQVVVRREEPARCSSSSSFTVRSVRYAECQKNHAANVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHKREVETEVVCECSSPPSNGT 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00046 95 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Pral5741g00046 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Pral5741g00046 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 82 - -
Pral5741g00046 95 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 79 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00046 Pral-Chr5741 230010 230643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00046 1 94 Zinc finger-homeobox gene family AT3G28917 74.747 6.36e-45 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral5741g00046 ZF-HD_dimer 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00046 - - tcc:18601512 168.703