Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00045 ATGGACATAACCCCCACAATCGCCAACAACACCGCCCCCAACACTCCTACCATTTCAAAATCCCCGGAACATGACAGTGAAACACCGACGAGGATCCCTACCGCCGCCAAGCCCTTGTGCTTCTCCAACGGAGTCCTAAAGCGCCGCCGCCGCCTCGCCGCCCAGCCACTGCCTTTCACGTACAAGGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCACGCCTTGGACGGTTGTGGCGAGTTCATGGCCTCTCCCAGCGCCAACCCCGCCGACCCAAGCTCCATCAGATGCGCCGCCTGTGGCTGCCACCGCAATTTCCACCGCCGTGAGCCAGAAGAGCCTATCTCCACAACCCACGTCATCGAGTACCAGTCTCACCATCGACACCATCCCCCACCGCCTCTTCCTTTTCAGGTTCCCAATCGAAGCCCCTGTTCGGCGTCGCCACCTCCGATCTCCTCTTCGTACTGCCCGTCCGCACCCCACATGCTCCTGGCTCTCCCATCAGCCGGTATACAAGCTCCTCCGGAGAGCGCGGCTGCTCCCGCAAACGCTCTTGCAACGCCGAGCCCGAATGCGTGGAAGCGGTTGAGGACCAAGTTCACCCAGGATCAAAAGGAAAAGATGTACCATTTCGCGGAGAGGGTGGGGTGGAAGATGCCGAAAAGGGACAAAGAATTGGTTCAAGAGTTCTGCAATGATGTTGGGGTCAACAGGGGAGTGTTGAAGGTTTGGATGCACAACAACAAGAATACTTTTGGCAAGAGAGATGTCGCTAATAATAATGATGGTAGGAACACCCTAGAGCAAGAACCTCACACCCTCACCGTTGAAATCCACGCCCACGACGACAACGGGAGCGCGCATGATCCGAATCATCATCTCTGCACCAACGATAATCCTGGGCCAAACCTGCGTACTAATGGGTCCTCTTCGTCCTCTTGA 951 0.5668 MDITPTIANNTAPNTPTISKSPEHDSETPTRIPTAAKPLCFSNGVLKRRRRLAAQPLPFTYKECLKNHAASLGGHALDGCGEFMASPSANPADPSSIRCAACGCHRNFHRREPEEPISTTHVIEYQSHHRHHPPPPLPFQVPNRSPCSASPPPISSSYCPSAPHMLLALPSAGIQAPPESAAAPANALATPSPNAWKRLRTKFTQDQKEKMYHFAERVGWKMPKRDKELVQEFCNDVGVNRGVLKVWMHNNKNTFGKRDVANNNDGRNTLEQEPHTLTVEIHAHDDNGSAHDPNHHLCTNDNPGPNLRTNGSSSSS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00045 316 MobiDBLite consensus disorder prediction 284 316 - -
Pral5741g00045 316 MobiDBLite consensus disorder prediction 293 316 - -
Pral5741g00045 316 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 112 IPR006456 -
Pral5741g00045 316 SUPERFAMILY Homeodomain-like 191 257 IPR009057 -
Pral5741g00045 316 MobiDBLite consensus disorder prediction 1 34 - -
Pral5741g00045 316 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Pral5741g00045 316 MobiDBLite consensus disorder prediction 1 23 - -
Pral5741g00045 316 FunFam Zinc-finger homeodomain protein 2 185 257 - -
Pral5741g00045 316 Pfam ZF-HD protein dimerisation region 60 113 IPR006456 -
Pral5741g00045 316 Gene3D - 186 256 - -
Pral5741g00045 316 NCBIfam homeobox domain, ZF-HD class 197 253 IPR006455 -
Pral5741g00045 316 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00045 Pral-Chr5741 219436 220545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00045 1 266 ZF-HD Transcription Factor Family AT3G28920 50.352 2.54e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral5741g00045 ZF-HD_dimer 6.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00045 - - qsa:O6P43_004486 361.688