Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00042 ATGCGTGTCACAGAAATACTCGAAATCTGTGAGGAATTGCTTCCTCTAAACAAATATATGCACACGACAAGTCAAAATATGTGGAGCTTGAATCCTGAAAGAGAGCAGCCGGACAACACAGGAACCCATAAACGACCTCTTCCTCTTCCCTTTGCAAAACTTGCAGAGATTTACCCTCCTGGTTTTCTCAGAAAGGTATTGGCAGAGATTATAGGAACATATCTGTTGGTGTTTGTGGCAAGTGGGGCGGCTGCTCTGAATGCTTTTGATGAGCAGAAAATATCAAAACTAGGAGCTTCACTTGCAGGAGGATTCGCTGTGATTGTGGTGATCCATGCCATCGGACACATATCTGGCGCTCACATGAACCCAGCAGTGTCCTTAGCTTTTGCTGCTGTGAGGCATTTTCCATGGAAACAGGTTCCAGTATACGTGGCAGCACAATTGACAGGAGCCATTTCTGCCTCTTTTACTTTGCGGTTGATATTGAACCCTATAAGACAGCTGGGGACGACCTCACCTTCTGGAAGTGATGTCCAGGCTCTCGCCATGGAGATGGTGGCGACGTTCACTATGATGTTCGTCGCCTCCGCCGTGTCAACTGATGCAAAAGCTGTTGGAGAACTCGCGGGAGTTGCAGTAGGCTCTTCAGTATTCATAGCAGGCATCCTTGCAGGACCTATATCAGGGGGATCAATGAACCCAGCAAGAACACTTGGTCCTGCAATAGCAAGTGGATCCTATAAAGGACTTTGGGTCTATCTGGTTGGACCAGTTTTTGGGGCACTTTTGGGAGCATGGTCTTACATTACTATTAAAGAGACGGATGAGTCAGCTCCAGCCAATTCACTGCTATCATTTCCATTCGAGCTACACTCAAAGAATAGGGAAACTGAACAAGTTAAAAACCAAGACAGGCCACAAATCATGAGTGATAATAAAGTTCAAAACCCAGCCACGGCACTCTCAATACTGGATATCGAAAGATCTCTCAATGGTGTATCATTCGATTCTTGA 1017 0.4592 MRVTEILEICEELLPLNKYMHTTSQNMWSLNPEREQPDNTGTHKRPLPLPFAKLAEIYPPGFLRKVLAEIIGTYLLVFVASGAAALNAFDEQKISKLGASLAGGFAVIVVIHAIGHISGAHMNPAVSLAFAAVRHFPWKQVPVYVAAQLTGAISASFTLRLILNPIRQLGTTSPSGSDVQALAMEMVATFTMMFVASAVSTDAKAVGELAGVAVGSSVFIAGILAGPISGGSMNPARTLGPAIASGSYKGLWVYLVGPVFGALLGAWSYITIKETDESAPANSLLSFPFELHSKNRETEQVKNQDRPQIMSDNKVQNPATALSILDIERSLNGVSFDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00042 338 Gene3D Glycerol uptake facilitator protein. 34 282 IPR023271 -
Pral5741g00042 338 SUPERFAMILY Aquaporin-like 56 279 IPR023271 -
Pral5741g00042 338 CDD MIP 64 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 Pfam Major intrinsic protein 61 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 ProSitePatterns MIP family signature. 121 129 IPR022357 -
Pral5741g00042 338 PANTHER AQUAPORIN NIP2-1 43 290 IPR034294 -
Pral5741g00042 338 PRINTS Major intrinsic protein family signature 64 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 PRINTS Major intrinsic protein family signature 103 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5741g00042 338 PRINTS Major intrinsic protein family signature 140 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00042 Pral-Chr5741 191450 195215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00042 64 287 Major Intrinsic Protein MIP AT4G10380 48.444 4.37e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00042 K09874 - qsa:O6P43_009088 348.591