Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5741g00008 ATGGCAAGGAGGAGGAAGGCTGTGGAAATAGAGGGAGACGGAGGCATGAAATGGGATGAGATGGTGAAGGAAGCTGAAGCACTGGGAGTGGGCAGAAGGGCCAGGAAGCGTTTTGTTGGGGTCAGACAAAGGCCTTCAGGAAGATGGGTTGCTGAGATTAAGGATACTATTCAGAAGATTAGAGTTTGGTTGGGAACTTTTGATACTGCTGAGGAAGCAGCTCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGCCAACACTAGGACCAATTTCTGGCCTTGCTCTCATTCTTCTTCAACCCCTGTTCTTTCCTCTAAGATCACGAAGCTCCTCCTTCAAAGGCTCAAAGCAAGGAACAACTCTTGCTTTGATTATTCTTCTTCTGATTTCTCTTCCTCTGTTTCCCTTCTTTCTGATCAGCAAGAAAAGCAGCAAGCAGATTTGTACAATGAAGCAGAAGCTGCGGATTTTTCAGTTGACCAGTTGACTGATTTCCTCAACGATCCTGAAGACTACATCGCAGGCAACAATGGCTTTAATCTGTTCACTGATCACAGTACACAAGTCGATTCCTTTACCAATAGTCTTGAATCATGTCTGACTGAAACAGATGAATGCAGGGAAAGAGAAATGGGGTTGGAAAATGAAGTCAGAAATGTTGCTGGCTGCAACTCAGGAGGGAAAAGAGAGGAAGAAAGTGAAGAGGAAATGATGCATATGGGTGTGCAGGATTTTGAGTTTCTGGACAAGGTTGCACCGTCATGTTACTATTCACCTTTTGAGATGGCTGAGGAGATGGAGGATCCTGTGGTGGAGGCAGAGAGCTACGGTGATGAGCCTTCAATGCTCAGAGCTGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCCCTTTATGCATTCAATGGAATACCTGAATGCTTGAAGCTGAAGCTTGCATCAGGAAACTCCAAGGGAAGAGGGGTTTCTGATCATTTAGCCGACCTTCAGATGGCTTGTAACATGGGACTCGTGGAAAGGAAAGAAGAAGAAAACCCAGAGGAGTGTTCTTCATCTTCTACCGGTGGTGATGGTGACTTGTTGCTTTGGAATTCACTGGATCTTCCTCCCATATGTTTCGTTAACTAA 1140 0.4561 MARRRKAVEIEGDGGMKWDEMVKEAEALGVGRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSHSSSTPVLSSKITKLLLQRLKARNNSCFDYSSSDFSSSVSLLSDQQEKQQADLYNEAEAADFSVDQLTDFLNDPEDYIAGNNGFNLFTDHSTQVDSFTNSLESCLTETDECREREMGLENEVRNVAGCNSGGKREEESEEEMMHMGVQDFEFLDKVAPSCYYSPFEMAEEMEDPVVEAESYGDEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLASGNSKGRGVSDHLADLQMACNMGLVERKEEENPEECSSSSTGGDGDLLLWNSLDLPPICFVN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5741g00008 379 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Pral5741g00008 379 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Pral5741g00008 379 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 299 - -
Pral5741g00008 379 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Pral5741g00008 379 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Pral5741g00008 379 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Pral5741g00008 379 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Pral5741g00008 379 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Pral5741g00008 379 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Pral5741g00008 379 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5741g00008 Pral-Chr5741 35077 36257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5741g00008 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 9.58e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5741g00008 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5741g00008 K09286 - gmx:100790398 419.083