Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral573g00004 ATGGCTCCCGATGCAAACCCCAATTCAAGAGTTGCCAAGGCCTTCAGCGCTATGAAGGATTTAGGAATTTCTTGTGATGAAGTGAAACCAGTGTTGCAAAAGCTGCTAAGATTGTATGATAAGAAATGGGAATATATTGAAGAAGATAATTATCGGACACTTGTAGATGCATACTTTGAGCTTAAGGAAGATAAGGAAGCGGGAGGTAAGAGAATAGCTCTCGTCAGTCATCATGCTGGGGAAAGACAAACTCAATCATTGGCAGATGAAGATGATATGCTCTTGTTAACCACGGACAACTCAAGACAAATACCATCTGCAGAAAAGAATAAAACGCCTCTAAATACTTTTGGATTGGAAATCACTGAATCGTCTCAACCTTTGACAAGCAATATGAGACCTAAAATTGGTCCTCAATCACTGAAAACAAGAATTAACGAGATAGAAAAGATATCAGAGTTGCCTGGCATGGCCACTACAGATAGAAAATCAAATTCTAAGAAAGAATCTTCTGAAAGGCGTGGGGAAGAACCTGCTGATAAGCCTAGATCTGCTCCTATACGAAGAGAAAATGTACCAAATGGACATTATAGGAAAGAGATACTGAAGACAAAAACTGGACAAAATAAGTTCCATCTTGGATCCAGTTCAACAAGGTCTAGAGATAATAACAACCCCAGAAGCAGCAAGGCTAATATTGACATTGCCTCTTCATCATCGGGAGAAGTAAATGTGAAACAAAAGCGTTCACATCCTGAGCTTAACCATGCAAACATATTAACAAATGGCCCACAACAAGCTGTTGCTCAGGATGAGAGGAAGCTATGTCAGTTTCTTAGTGACATAACAAAAGGCTCAGAAAAGGTGAAGATATCATTGATAGATGAGTATGGTAGTGGGGAACTGCCAAAGTTTAATTACATACCACACAATCTAATATATCAGAGTGCTAATGTAAATATTTCACTGGCTCGTATTGCGGATGAAGGTTGCTGCTCAGATTGTTTAGGAGACTGTCTTTCTCAATCATTACCTTGTGCATGTGCTCAAGAGACTGGTGGAGAGTTTGCCTACACACTGGAGGGCTTGTTGAAAGACGAATTTCTAACATCTTGCTTGTCAATGAAAAAGGAACCTCAAGCTCATCACCTGGTGTACTGTCAGGAGTGCCCACTAGAGAGGTCCAAGAATGAATATATGCCTGAGCAATGCAAGGGGCATCTGATCAGGAGGTTCATTAAGGAATGTTGGAGGAAATGCGGATGTGACATGCAATGTGGAAATCGTATAGTGCAACGAGGTTTAAGATGCAAATTACAGGTGTTCTTTACTGGTGAACGAAAGGGCTGGGGCCTTAGAACACTGGAAGATTTGCCTAGGGGATCCTTTGTTTGTGAATATGTCGGTGAAATATTAACCAACATGGAGTTGTATGAAAGAATTGTGCACAAAAATGGCAATGAGAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAGGAGTGTTAGAAGATGAGGAGGCACTGTGTCTAGATGCAACATATAATGGAAATGTTGCCAGATTTATCAATCATAGATGCTCAGATGCAAATCTGATTGACATTCCCGTTGAAGTGGAGACTCCTGATCGCCATTATTATCATCTTGCCTTCTTCACTAACAGGAAAGTGCGAGCTTATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGATCACCCTATCAAAGCATTCCAATGTTGCTGTGGGAGCTCATTCTGCCGCAACAAGAAGTGGAAAGGGAAGCGAAAATTAGTAAAACGAGCATGA 1827 0.41 MAPDANPNSRVAKAFSAMKDLGISCDEVKPVLQKLLRLYDKKWEYIEEDNYRTLVDAYFELKEDKEAGGKRIALVSHHAGERQTQSLADEDDMLLLTTDNSRQIPSAEKNKTPLNTFGLEITESSQPLTSNMRPKIGPQSLKTRINEIEKISELPGMATTDRKSNSKKESSERRGEEPADKPRSAPIRRENVPNGHYRKEILKTKTGQNKFHLGSSSTRSRDNNNPRSSKANIDIASSSSGEVNVKQKRSHPELNHANILTNGPQQAVAQDERKLCQFLSDITKGSEKVKISLIDEYGSGELPKFNYIPHNLIYQSANVNISLARIADEGCCSDCLGDCLSQSLPCACAQETGGEFAYTLEGLLKDEFLTSCLSMKKEPQAHHLVYCQECPLERSKNEYMPEQCKGHLIRRFIKECWRKCGCDMQCGNRIVQRGLRCKLQVFFTGERKGWGLRTLEDLPRGSFVCEYVGEILTNMELYERIVHKNGNERHTYPVTLDADWGSEGVLEDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLAFFTNRKVRAYEELTWDYGIDFDDHDHPIKAFQCCCGSSFCRNKKWKGKRKLVKRA 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral573g00004 608 MobiDBLite consensus disorder prediction 208 245 - -
Pral573g00004 608 Pfam Ubiquitin-binding WIYLD domain 9 63 IPR018848 -
Pral573g00004 608 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 603 - -
Pral573g00004 608 FunFam SET-domain containing protein lysine methyltransferase family protein 282 596 - -
Pral573g00004 608 Pfam Pre-SET motif 282 429 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral573g00004 608 SMART set_7 437 577 IPR001214 GO:0005515
Pral573g00004 608 SMART preset_2 279 421 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral573g00004 608 CDD SET_SETDB-like 303 571 - -
Pral573g00004 608 MobiDBLite consensus disorder prediction 149 259 - -
Pral573g00004 608 MobiDBLite consensus disorder prediction 162 206 - -
Pral573g00004 608 ProSiteProfiles Pre-SET domain profile. 331 434 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral573g00004 608 SUPERFAMILY SET domain 289 594 IPR046341 -
Pral573g00004 608 Gene3D SET domain 282 596 IPR046341 -
Pral573g00004 608 Pfam SET domain 449 571 IPR001214 GO:0005515
Pral573g00004 608 ProSiteProfiles SET domain profile. 437 571 IPR001214 GO:0005515
Pral573g00004 608 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 608 IPR025776 -
Pral573g00004 608 Gene3D - 3 64 IPR043017 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral573g00004 Pral-Chr573 18076 22439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral573g00004 413 594 C2H2 Transcription Factor Family AT2G23740 40.107 8.33e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral573g00004 Pre-SET 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral573g00004 - - vum:124833883 668.692