Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5728g00003 ATGGGTCGCGAGACGTTGCCAGTTGCAGCTCCACCTGCCCCAGTAGCCACAACACCGAATCCAACATCACCAGTAGTAGCACCACAAGCTCCTCCTACATCACTGGCTCCTGGGTTTCGTTTTCACCCAACTGATGAGGAGCTCGTTATTTACTACCTTAAGCGCAAAGTTTGTGGAAAAACTTTCCGATTTGATGCAATCTCTGAGGTCGACATTTACAGAAGCGAGCCTTGGGACCTAGCAGATAAGTCGAGGTTAAAGACGAGGGACCAAGAATGGTATTTTTTTAGTGCATTGGATAAGAAATACGGTAATGGAGGGAGAATGAACAGGGCTACGAGCAAAGGATACTGGAAAGCCACTGGGAATGACCGTCCAGTGAGGCATGACCAAAGGACCGTGGGGCTGAAGAAAACTTTGGTATTTCATAGTGGAAGGGCTCCGGATGGTAAGCGTACCAATTGGGTTATGCATGAGTACAGGCTTGTTGATGAAGAGCTGGAAAGAGCTGGAATTGGGTCGGCCCAGGATGCATACGTTTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGTCAACGTTATGCACCTTTCATTGAGGAAGAATGGGATGATTCATCAGCACTGATTCCAGGGGCGGAGCCTGTAAATGAAGCTACAGCTCCCCGTCGCTCACTCATTGAAGGCAATGGTCATGTTGGCCGTTTTGAGCGAACTAATGCTGTCCAGGATACTCAATCCATCAATAAAGCTCCTCTTGATGTGAATAAGCTACCAATTGAAACTCAAAATCTGCTAGCTGTCTGCAAGAGGGAGAGCATGGCTGAGTATCCATCACCCGAAAGGGATAATTCTAAGTCTATGGATGATTATCCATCACCACAAACAGACAATCCGAAGCCATTCTCGCTAATATACAAAAGAAGGCGGCATAATTTAAACTCTAGCAATTCAAATGTTCCCGAGGATTCAGCCCGTAATGGCCAGGATCCATGCTCATCGATAATAACAACTGCTGCAACAACACTCCCAGCCACAACCACCACTACAACTACCAGCACTTCCTCAAGAAAACATTTCTTGTCTGCATTGGTGGAGTTTTCCCTACTTGAATCTCTTGAACCTAAGGAAAGTCCTTCGACTCGGGTGCCGGAATTTGACCCCTCTACACTTGACTCCCCTCTGCCCCCCAGCTGCTTGAAATTCATCCAACAGTTGCAGGAGGAGGTTCGTAAACTCTCAGTGGAAAGGGAGACAATGAAGTTTGAGATGATGAGTGCGCAGGCCATGATAAACATTCTGCAATCACGTATTGACTTGCTGACCAAAGAGAACAAGGAGTTGAAGGGAGGCACTGAGAATGCTTAG 1377 0.4662 MGRETLPVAAPPAPVATTPNPTSPVVAPQAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKTFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGIGSAQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDSSALIPGAEPVNEATAPRRSLIEGNGHVGRFERTNAVQDTQSINKAPLDVNKLPIETQNLLAVCKRESMAEYPSPERDNSKSMDDYPSPQTDNPKPFSLIYKRRRHNLNSSNSNVPEDSARNGQDPCSSIITTAATTLPATTTTTTTSTSSRKHFLSALVEFSLLESLEPKESPSTRVPEFDPSTLDSPLPPSCLKFIQQLQEEVRKLSVERETMKFEMMSAQAMINILQSRIDLLTKENKELKGGTENA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5728g00003 458 MobiDBLite consensus disorder prediction 1 31 - -
Pral5728g00003 458 ProSiteProfiles NAC domain profile. 35 187 IPR003441 GO:0003677|GO:0006355
Pral5728g00003 458 MobiDBLite consensus disorder prediction 312 335 - -
Pral5728g00003 458 FunFam Nac domain-containing protein 86 44 190 - -
Pral5728g00003 458 SUPERFAMILY NAC domain 29 188 IPR036093 GO:0003677|GO:0006355
Pral5728g00003 458 Coils Coil 406 447 - -
Pral5728g00003 458 MobiDBLite consensus disorder prediction 274 335 - -
Pral5728g00003 458 Gene3D NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Pral5728g00003 458 MobiDBLite consensus disorder prediction 12 31 - -
Pral5728g00003 458 Pfam No apical meristem (NAM) protein 37 162 IPR003441 GO:0003677|GO:0006355
Pral5728g00003 458 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 34 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5728g00003 Pral-Chr5728 31319 39514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5728g00003 367 452 NAC Transcription Factor Family AT3G10480 50.000 4.60e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5728g00003 NAM 6.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5728g00003 - - pcin:129312892 809.29