Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5727g00003 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGCACGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCCATCTCAAGAGCTGCAGCTGATATTTAACAGTGAATATTTTAAGCTAAACAAGGAAATAAAAGAGAGGACTCTTGAAATAAGACAGCTCAATGGAGAAGATCTACAAGGACTGTCTATAAAAGATCTGAGGAAGCTAGAAGATTTACTTAGAACAAGCTTGCATCGCATTTCAAAAGCAAAGGTCGAAGTATTTGAGCAGGAGATCAATGTTCTAAAGAAAAAGGTTAGCGTTATATTTGTTTATCAAAAGCATCCCATGCATTATATTCAGTCTTTTCCTCAGTGTTATAGTGAGAAAGAAGACGGACTCAAGGAAGAAAACCAGAGGCTAAAGAAGTTCACCAAATCCATGGAAGAAAACCAGAGATTAGATCAGGCCCAATGGCTTGACGATGAACAAGATCAGCCATCAGACGCGTCTCCCACAACAAGGCAAGTTGCTATAAACGCCACTGATGAGAGAGTTTGTTGTTTATCTCCGGTTACTGTAGATTAG 744 0.4032 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIERRNLYSDVNLVKSYQPSQELQLIFNSEYFKLNKEIKERTLEIRQLNGEDLQGLSIKDLRKLEDLLRTSLHRISKAKVEVFEQEINVLKKKVSVIFVYQKHPMHYIQSFPQCYSEKEDGLKEENQRLKKFTKSMEENQRLDQAQWLDDEQDQPSDASPTTRQVAINATDERVCCLSPVTVD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5727g00003 247 Pfam K-box region 91 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5727g00003 247 Coils Coil 186 206 - -
Pral5727g00003 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5727g00003 247 MobiDBLite consensus disorder prediction 213 229 - -
Pral5727g00003 247 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral5727g00003 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Pral5727g00003 247 MobiDBLite consensus disorder prediction 206 229 - -
Pral5727g00003 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5727g00003 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5727g00003 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5727g00003 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5727g00003 247 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pral5727g00003 247 ProSiteProfiles K-box domain profile. 88 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5727g00003 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5727g00003 247 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5727g00003 Pral-Chr5727 99757 108919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5727g00003 1 157 MADS-box Gene Family AT2G22540 52.866 1.41e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5727g00003 K-box 8.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5727g00003 - - pcin:129285682 238.039