Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5727g00001 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCGTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGTACTGATCTGGGAATTGTATCGAACTGGGAAATGAAATTATGTGTTGATAGGCCCGATGGCTTGTGGATGAACAAGATCAACCATCAGACGCGCCTCCCACAACAAGGTTACTGTTTCCCTGAATGA 309 0.4434 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALVVFSASGKLFDYASTSTDLGIVSNWEMKLCVDRPDGLWMNKINHQTRLPQQGYCFPE 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5727g00001 102 CDD MADS_MEF2_like 3 63 IPR033896 GO:0000977|GO:0045944
Pral5727g00001 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5727g00001 102 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
Pral5727g00001 102 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5727g00001 102 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 76 - -
Pral5727g00001 102 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5727g00001 102 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Pral5727g00001 102 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5727g00001 102 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5727g00001 102 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5727g00001 Pral-Chr5727 3193 12550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5727g00001 1 60 MADS-box Gene Family AT4G24540 66.667 6.09e-25 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5727g00001 SRF-TF 9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5727g00001 - - tcc:18608209 103.605