Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5726g00001 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTCTGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCCAGTACAAGCACGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCTATCTCAAGAGCTACAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAAGTAAAAGAGAAGACTCTTGAAATAAGACAACTCAACGGAGAAGATCTGCAAGGGCTATCTGTAAAAGATCTGAGGAAGCTAGAAGATTTACTTAGCACAAGCTTGCATCGCATTTCAAAAGCAAAGGTTAAAGTATTTGAGCAGGAGATCAATATTCTAAAGAAAAAGGAAGACGAACTCAAGGAAGAAAACCAGAGGCTAACGAAGGAAATCAAATCCATGGAAGAAAACCAGAGATTAGATCAGGCCCAGTGGCTTGAGGATGAACAATATCAGCCATCAGACACGTCTCCCGCAACAAGGCAAGTTGCTATAAACGCCACTGATGAGAGAGCTGTGTTTTATCTCCGGTTACTGTAG 657 0.4186 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKALELSTLCDAEIALLVFSASGKLFDYASTSTRQVIERRNLYSDVNLVKSYQLSQELQVEGEYFKLNKEVKEKTLEIRQLNGEDLQGLSVKDLRKLEDLLSTSLHRISKAKVKVFEQEINILKKKEDELKEENQRLTKEIKSMEENQRLDQAQWLEDEQYQPSDTSPATRQVAINATDERAVFYLRLL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5726g00001 218 Coils Coil 93 113 - -
Pral5726g00001 218 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral5726g00001 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Pral5726g00001 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5726g00001 218 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pral5726g00001 218 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral5726g00001 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5726g00001 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5726g00001 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5726g00001 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5726g00001 218 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5726g00001 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5726g00001 218 Coils Coil 142 183 - -
Pral5726g00001 218 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5726g00001 Pral-Chr5726 41608 76873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5726g00001 1 179 MADS-box Gene Family AT2G22540 48.352 9.70e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5726g00001 K-box 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5726g00001 - - pcin:129285682 254.603