Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00012 ATGACGAGAAGGAAGATACAGATGAAGAAAATTGACAGTGTAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAAGAACTCTTGACTCTTTGTGATGCTGAGATTGCCCTCTTAGTCTTCTCTTCTACTGGCACGCTCTTTGATTTTGCTAGCTCAAGCGCGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCCATCTCAAGAGCTACAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAAATAGAAGAGAAGACTCTTGAAATAAGACAGCTCAATGGAGAAGATCTACAAGGACTGTCTGTAAAAGATCTGAGGAAGCTAGAAGATTTACTTAGCACAAGCTTGCATCGTATTTGA 414 0.4034 MTRRKIQMKKIDSVTARQVTFSKRRKGLFKKAQELLTLCDAEIALLVFSSTGTLFDFASSSARQVIERRNLYSDVNLVKSYQPSQELQVEGEYFKLNKEIEEKTLEIRQLNGEDLQGLSVKDLRKLEDLLSTSLHRI 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00012 137 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5725g00012 137 Coils Coil 93 113 - -
Pral5725g00012 137 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral5725g00012 137 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5725g00012 137 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Pral5725g00012 137 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Pral5725g00012 137 Pfam K-box region 85 137 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00012 137 ProSiteProfiles K-box domain profile. 86 137 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00012 137 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 137 - -
Pral5725g00012 137 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00012 137 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5725g00012 137 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5725g00012 137 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00012 Pral-Chr5725 245507 253253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00012 1 137 MADS-box Gene Family AT2G22540 56.115 2.99e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5725g00012 K-box 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00012 - - pcin:129285682 189.504