Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00011 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGCACGAGGCAAGTAATTGGAAGGAGAAACCTATACTCAAATGTGAACCTTGTGAAGTCATACCAGCCACCTCAAGAGCTACAGGTCGAAGTATTTGAGCAGGAGATCAGTGTTCTAAAGAAAAAGGAAGACGGACTCAAGGAAGAAAACCAGAGGCTAAAGAAGGTTGTCAGATTCTTGTCACTGATTCTCTTGTTCACCAAATCCATGGAAGAAAACCAGAGATTAGATCAGGCCCGATGGCTTGAGGATGAACAAGATCAGCCATCAGACGCGCCTCCCACAACAAGGCAAGTTGCTATAAACGCCACTGATGAGAGAGCTGTGTTTTATCTCCGGTTACTGTAG 528 0.4451 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIGRRNLYSNVNLVKSYQPPQELQVEVFEQEISVLKKKEDGLKEENQRLKKVVRFLSLILLFTKSMEENQRLDQARWLEDEQDQPSDAPPTTRQVAINATDERAVFYLRLL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00011 175 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Pral5725g00011 175 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral5725g00011 175 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pral5725g00011 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5725g00011 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5725g00011 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5725g00011 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5725g00011 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00011 175 Coils Coil 89 116 - -
Pral5725g00011 175 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Pral5725g00011 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00011 Pral-Chr5725 226382 234984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00011 1 89 MADS-box Gene Family AT2G22540 59.551 1.63e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5725g00011 SRF-TF 7.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00011 - - pcin:129285682 135.191