Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00010 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGCACGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCCACCTCAAGAGCTACAGGTTGAAGGTGAATATTTTATGCTAAACAAGGAAATAGAAGAGAAGACTCTTGAAATAAGGCAATTGAATGGGGAAGAACTTCAAGAATGCACACTTGAAGAATTGCAGAAACTAGAGGAAAGACTTCAAAGAGGCTTGTCTCGAGTTTCAAAAACAAAGGATGAAAGATTCATGAAACCCATCAACGCACTAAAGAGAAAGGGAATCCAACTCATGGAAGAAAATCGAACATTGAAGCAGAGACTTGCACGTGAACGAGGCCAGTCTTCTGACTCCATCGTCATTTGCAGTTCATCTGACAATCCTCCTCAAGACGCTGATAGTTTGATGCATCTCTCAGGCTGGGGTAACAACACTTCGCTCTCCTTCTCAAGAATAAACCTCCCCTTCTCTCTTTTGAAGGAGAGATTGGCTGAAATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAGGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGCACGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCCACCTCAAGAGCTACAGGTGGAAGGTGAATATTTTAAGCTAAACAAGGAAGTAAAAGAGAACACTCTTGAAATAAGGTATTACTATTACCATTATTAA 1026 0.4181 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIERRNLYSDVNLVKSYQPPQELQVEGEYFMLNKEIEEKTLEIRQLNGEELQECTLEELQKLEERLQRGLSRVSKTKDERFMKPINALKRKGIQLMEENRTLKQRLARERGQSSDSIVICSSSDNPPQDADSLMHLSGWGNNTSLSFSRINLPFSLLKERLAEMTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIERRNLYSDVNLVKSYQPPQELQVEGEYFKLNKEVKENTLEIRYYYYHY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00010 341 Coils Coil 93 113 - -
Pral5725g00010 341 Coils Coil 149 169 - -
Pral5725g00010 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 230 309 - -
Pral5725g00010 341 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Pral5725g00010 341 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 ProSiteProfiles MADS-box domain profile. 228 288 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00010 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 237 284 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral5725g00010 341 SUPERFAMILY SRF-like 229 310 IPR036879 GO:0003677|GO:0046983
Pral5725g00010 341 Gene3D - 240 306 IPR036879 GO:0003677|GO:0046983
Pral5725g00010 341 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral5725g00010 341 Coils Coil 120 143 - -
Pral5725g00010 341 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00010 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 SMART madsneu2 228 287 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5725g00010 341 CDD MADS_MEF2_like 230 301 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00010 Pral-Chr5725 170675 204805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00010 228 335 MADS-box Gene Family AT2G22540 51.818 6.25e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5725g00010 K-box 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00010 - - pdul:117627986 233.032