Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00008 ATGAGAAGGAAGATACAGACAAAGAAAATTAACAGTAAAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAGCTCTCGACTCTTTGTGATGCTGAGATTGCCCTCTCAGTCTTCTCTTCTAATGGCAAGCTCTTTGATTATGCTAGCTCGAGTATGCGGCGGGTAATTGAAAGGTACGATCAACATTCTGTCGTTCAAAGACTAGGCCAATCATCTACTGATCTGCAGCTTGGAGGTGATGAGACTAAGCTGCACAAGGTGGTAGCAGAAAGGACTCGTGGATTGAGTTTGAAGGAGAGATTGGTTGAAATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCTGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCCAGTACAAGCACGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCCACCTCAAGAGCTACAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAAGTAAAAGAGAAGACTCTTGAAATAAGACAGCTCAACGGAGAAGATCTGCAAGGGCTGTCTGTAAAAGATCTGAGGAAGCTAGAAGATTTACTTAGCACAAGCTTGCATCGCATTTCAAAAGCAAAGGTTAAAGTATTTGAGCAGGAGATCAATATTCTAAAGAAAAAGGCCCAATGGCTTGAGGATGAACAATATCAGCCATCAGACACAGTCTCCCGCAACAAGGCAAGTTGCTATAAACGCCACTGA 882 0.4274 MRRKIQTKKINSKTARQVTFSKRRKGLFKKAQELSTLCDAEIALSVFSSNGKLFDYASSSMRRVIERYDQHSVVQRLGQSSTDLQLGGDETKLHKVVAERTRGLSLKERLVEMTRRKIAIKKIENVAARLVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIERRNLYSDVNLVKSYQPPQELQVEGEYFKLNKEVKEKTLEIRQLNGEDLQGLSVKDLRKLEDLLSTSLHRISKAKVKVFEQEINILKKKAQWLEDEQYQPSDTVSRNKASCYKRH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00008 293 Coils Coil 254 274 - -
Pral5725g00008 293 ProSiteProfiles K-box domain profile. 198 288 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00008 293 FunFam Transcription factor, MADS-box 12 81 - -
Pral5725g00008 293 Gene3D - 125 191 IPR036879 GO:0003677|GO:0046983
Pral5725g00008 293 Pfam K-box region 198 276 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00008 293 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral5725g00008 293 SUPERFAMILY SRF-like 114 195 IPR036879 GO:0003677|GO:0046983
Pral5725g00008 293 SMART madsneu2 113 172 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 85 - -
Pral5725g00008 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 122 169 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 56 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 ProSiteProfiles MADS-box domain profile. 113 173 IPR002100 GO:0003677|GO:0046983
Pral5725g00008 293 CDD MADS_MEF2_like 115 186 IPR033896 GO:0000977|GO:0045944
Pral5725g00008 293 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Pral5725g00008 293 Coils Coil 205 225 - -
Pral5725g00008 293 Gene3D - 12 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00008 Pral-Chr5725 131527 150559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00008 113 274 MADS-box Gene Family AT2G22540 48.780 2.48e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5725g00008 K-box 9.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00008 - - pcin:129285682 224.557