Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5725g00007 ATGACAAGACAGAAGATAGAAATAAAGAAGATCGATAACATAACTGCGAGGCAAGTGACGTTCTCAAAGAGAAGAAAAGGGCTATTCAAGAAAGCTCAGGAACTATCAACTCTCTGTGATGCTGAGATTGCTCTAATGGTCTTTTCTTCTACTGGGAAGCTCTTTGAATATGCTAGCTCAAGCGTGCAGCTGGTTATTGAAAGGCTTGGTCCGCTCTCAGACGACACTGAAAGATTAGACCATCCTTCTATAGAGTATGACAGGGACACTTTCAGCAAGCTCAGCAAGGAAGAAGCCAATAAGGTTCAGGAACTGAGGCAGTTGAAGGGAGAAGAGCTTGAAGGATTGAACACAAAAGAATTAGAGAAGCTTGAGGACCAAATAAAAAGAGGTTTGAGCCGTGTTGTCAAAGCAAAGGATGAAATGATCATGAAAGAGATCAATGCCCTGAAGAGAAAGGGAATCCAGCTGATGCGAGAAAATCAGAGATTGAAACAGGTGAAGAATGTTGGAGAAGAACAAGGTCGTTCATCTGAGTCAACCAATAATGGCAGCACATCTGATCCTCCACGTGACGATGATAGTTCAGACACCTCTCTCAGATTGGGGTCAGTATAA 618 0.4272 MTRQKIEIKKIDNITARQVTFSKRRKGLFKKAQELSTLCDAEIALMVFSSTGKLFEYASSSVQLVIERLGPLSDDTERLDHPSIEYDRDTFSKLSKEEANKVQELRQLKGEELEGLNTKELEKLEDQIKRGLSRVVKAKDEMIMKEINALKRKGIQLMRENQRLKQVKNVGEEQGRSSESTNNGSTSDPPRDDDSSDTSLRLGSV 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5725g00007 205 Coils Coil 121 141 - -
Pral5725g00007 205 ProSiteProfiles K-box domain profile. 84 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00007 205 FunFam Transcription factor, MADS-box 13 83 - -
Pral5725g00007 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Pral5725g00007 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral5725g00007 205 MobiDBLite consensus disorder prediction 165 205 - -
Pral5725g00007 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 MobiDBLite consensus disorder prediction 173 189 - -
Pral5725g00007 205 Pfam K-box region 88 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5725g00007 205 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Pral5725g00007 205 Coils Coil 147 167 - -
Pral5725g00007 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5725g00007 205 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5725g00007 Pral-Chr5725 77572 106212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5725g00007 1 203 MADS-box Gene Family AT2G22540 49.787 8.12e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5725g00007 K-box 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5725g00007 - - qlo:115968134 221.476